Understanding the promises and hurdles of metagenomic next-generation sequencing as a diagnostic tool for infectious diseases

PJ Simner, S Miller, KC Carroll - Clinical Infectious Diseases, 2018 - academic.oup.com
Agnostic metagenomic next-generation sequencing (mNGS) has emerged as a promising
single, universal pathogen detection method for infectious disease diagnostics. This …

mNGS in clinical microbiology laboratories: on the road to maturity

D Han, Z Li, R Li, P Tan, R Zhang… - Critical reviews in …, 2019 - Taylor & Francis
Metagenomic next-generation sequencing (mNGS) is increasingly being applied in clinical
laboratories for unbiased culture-independent diagnosis. Whether it can be a next routine …

Japanese encephalitis virus: the emergence of genotype IV in Australia and its potential endemicity

JS Mackenzie, DT Williams, AF van den Hurk… - Viruses, 2022 - mdpi.com
A fatal case of Japanese encephalitis (JE) occurred in northern Australia in early 2021.
Sequence studies showed that the virus belonged to genotype IV (GIV), a genotype …

[HTML][HTML] Encephalitis diagnosis using metagenomics: application of next generation sequencing for undiagnosed cases

JR Brown, T Bharucha, J Breuer - Journal of infection, 2018 - Elsevier
Background Current estimates suggest that even in the most resourced settings, the
aetiology of encephalitis is identified in less than half of clinical cases. It is acknowledged …

Direct detection and identification of prosthetic joint infection pathogens in synovial fluid by metagenomic shotgun sequencing

MI Ivy, MJ Thoendel, PR Jeraldo… - Journal of clinical …, 2018 - Am Soc Microbiol
Metagenomic shotgun sequencing has the potential to transform how serious infections are
diagnosed by offering universal, culture-free pathogen detection. This may be especially …

The feasibility of metagenomic next-generation sequencing to identify pathogens causing tuberculous meningitis in cerebrospinal fluid

S Wang, Y Chen, D Wang, Y Wu, D Zhao… - Frontiers in …, 2019 - frontiersin.org
Purpose The application of metagenomic next-generation sequencing (mNGS) in the
diagnosis of tuberculous meningitis (TBM) remains poorly characterized. Here, we …

Clinical utilization of the FilmArray meningitis/encephalitis (ME) multiplex polymerase chain reaction (PCR) assay

S Radmard, S Reid, P Ciryam, A Boubour, N Ho… - Frontiers in …, 2019 - frontiersin.org
Objective: To assess the clinical utilization and performance of the FilmArray® Meningitis/
Encephalitis (ME) multiplex polymerase chain reaction (PCR) panel in a hospital setting …

Development and optimization of metagenomic next-generation sequencing methods for cerebrospinal fluid diagnostics

PJ Simner, HB Miller, FP Breitwieser… - Journal of clinical …, 2018 - Am Soc Microbiol
The purpose of this study was to develop and optimize different processing, extraction,
amplification, and sequencing methods for metagenomic next-generation sequencing …

[HTML][HTML] Next-generation sequencing of the cerebrospinal fluid in the diagnosis of neurobrucellosis

S Fan, H Ren, Y Wei, C Mao, Z Ma, L Zhang… - International Journal of …, 2018 - Elsevier
Background Brucellosis is the most common zoonotic infection in the world. Brucellosis with
nervous system involvement is known as 'neurobrucellosis'(NB). The diagnosis of NB is …

[HTML][HTML] Improved diagnosis of viral encephalitis in adult and pediatric hematological patients using viral metagenomics

EC Carbo, EP Buddingh, E Karelioti, IA Sidorov… - Journal of Clinical …, 2020 - Elsevier
Metagenomic sequencing is a powerful technique that enables detection of the full spectrum
of pathogens present in any specimen in a single test. Hence, metagenomics is increasingly …