Understanding the promises and hurdles of metagenomic next-generation sequencing as a diagnostic tool for infectious diseases
PJ Simner, S Miller, KC Carroll - Clinical Infectious Diseases, 2018 - academic.oup.com
Agnostic metagenomic next-generation sequencing (mNGS) has emerged as a promising
single, universal pathogen detection method for infectious disease diagnostics. This …
single, universal pathogen detection method for infectious disease diagnostics. This …
mNGS in clinical microbiology laboratories: on the road to maturity
D Han, Z Li, R Li, P Tan, R Zhang… - Critical reviews in …, 2019 - Taylor & Francis
Metagenomic next-generation sequencing (mNGS) is increasingly being applied in clinical
laboratories for unbiased culture-independent diagnosis. Whether it can be a next routine …
laboratories for unbiased culture-independent diagnosis. Whether it can be a next routine …
Japanese encephalitis virus: the emergence of genotype IV in Australia and its potential endemicity
JS Mackenzie, DT Williams, AF van den Hurk… - Viruses, 2022 - mdpi.com
A fatal case of Japanese encephalitis (JE) occurred in northern Australia in early 2021.
Sequence studies showed that the virus belonged to genotype IV (GIV), a genotype …
Sequence studies showed that the virus belonged to genotype IV (GIV), a genotype …
[HTML][HTML] Encephalitis diagnosis using metagenomics: application of next generation sequencing for undiagnosed cases
Background Current estimates suggest that even in the most resourced settings, the
aetiology of encephalitis is identified in less than half of clinical cases. It is acknowledged …
aetiology of encephalitis is identified in less than half of clinical cases. It is acknowledged …
Direct detection and identification of prosthetic joint infection pathogens in synovial fluid by metagenomic shotgun sequencing
MI Ivy, MJ Thoendel, PR Jeraldo… - Journal of clinical …, 2018 - Am Soc Microbiol
Metagenomic shotgun sequencing has the potential to transform how serious infections are
diagnosed by offering universal, culture-free pathogen detection. This may be especially …
diagnosed by offering universal, culture-free pathogen detection. This may be especially …
The feasibility of metagenomic next-generation sequencing to identify pathogens causing tuberculous meningitis in cerebrospinal fluid
S Wang, Y Chen, D Wang, Y Wu, D Zhao… - Frontiers in …, 2019 - frontiersin.org
Purpose The application of metagenomic next-generation sequencing (mNGS) in the
diagnosis of tuberculous meningitis (TBM) remains poorly characterized. Here, we …
diagnosis of tuberculous meningitis (TBM) remains poorly characterized. Here, we …
Clinical utilization of the FilmArray meningitis/encephalitis (ME) multiplex polymerase chain reaction (PCR) assay
Objective: To assess the clinical utilization and performance of the FilmArray® Meningitis/
Encephalitis (ME) multiplex polymerase chain reaction (PCR) panel in a hospital setting …
Encephalitis (ME) multiplex polymerase chain reaction (PCR) panel in a hospital setting …
Development and optimization of metagenomic next-generation sequencing methods for cerebrospinal fluid diagnostics
PJ Simner, HB Miller, FP Breitwieser… - Journal of clinical …, 2018 - Am Soc Microbiol
The purpose of this study was to develop and optimize different processing, extraction,
amplification, and sequencing methods for metagenomic next-generation sequencing …
amplification, and sequencing methods for metagenomic next-generation sequencing …
[HTML][HTML] Next-generation sequencing of the cerebrospinal fluid in the diagnosis of neurobrucellosis
S Fan, H Ren, Y Wei, C Mao, Z Ma, L Zhang… - International Journal of …, 2018 - Elsevier
Background Brucellosis is the most common zoonotic infection in the world. Brucellosis with
nervous system involvement is known as 'neurobrucellosis'(NB). The diagnosis of NB is …
nervous system involvement is known as 'neurobrucellosis'(NB). The diagnosis of NB is …
[HTML][HTML] Improved diagnosis of viral encephalitis in adult and pediatric hematological patients using viral metagenomics
EC Carbo, EP Buddingh, E Karelioti, IA Sidorov… - Journal of Clinical …, 2020 - Elsevier
Metagenomic sequencing is a powerful technique that enables detection of the full spectrum
of pathogens present in any specimen in a single test. Hence, metagenomics is increasingly …
of pathogens present in any specimen in a single test. Hence, metagenomics is increasingly …