Motivation: Multiple sequence alignment (MSA) is important work, but bottlenecks arise in
the massive MSA of homologous DNA or genome sequences. Most of the available state-of …

Background The multiple sequence alignment (MSA) is a classic and powerful technique for
sequence analysis in bioinformatics. With the rapid growth of biological datasets, MSA …

The fourth industrial revolution (I 4.0) is paving the way for change in manufacturing
systems. A logical enabler for dynamic and adaptive manufacturing systems including smart …

A rooted phylogenetic network is an important structure in the description of evolutionary
relationships. Computing the distance (topological dissimilarity) between two rooted …

Motivation Recent advancements in high-throughput sequencing technology have
significantly increased the focus on non-coding RNA (ncRNA) research within the life …

Horizontal gene transfer (HGT) from one organism to another, according to some
researchers, can be abundant in the evolution of species. A phylogenetic network is a …

Background Building the evolutionary trees for massive unaligned DNA sequences is
challenging and crucial. However, reconstructing evolutionary tree for ultra-large sequences …

Constructing phylogenetic tree for ultra-large sequences (eg. Files more than 1GB) is quite
difficult, especially for the unaligned DNA sequences. It is meaningless and impracticable to …

Background: Systematic phylogenetic networks are essential for studying the evolutionary
relationships and diversity among species. These networks are particularly important for …

Assembly sequence planning is an important step. Traditional, assembly sequences are not
planned for alternatives which limit the flexibility to handle changes on the shop floor. A …