Outbreak analytics: a developing data science for informing the response to emerging pathogens

JA Polonsky, A Baidjoe, ZN Kamvar… - … of the Royal …, 2019 - royalsocietypublishing.org
Despite continued efforts to improve health systems worldwide, emerging pathogen
epidemics remain a major public health concern. Effective response to such outbreaks relies …

A review of epidemiological parameters from Ebola outbreaks to inform early public health decision-making

MD Van Kerkhove, AI Bento, HL Mills, NM Ferguson… - Scientific data, 2015 - nature.com
The unprecedented scale of the Ebola outbreak in West Africa has, as of 29 April 2015,
resulted in more than 10,884 deaths among 26,277 cases. Prior to the ongoing outbreak …

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

R Bouckaert, TG Vaughan… - PLoS computational …, 2019 - journals.plos.org
Elaboration of Bayesian phylogenetic inference methods has continued at pace in recent
years with major new advances in nearly all aspects of the joint modelling of evolutionary …

[HTML][HTML] Global, regional, and national disability-adjusted life-years (DALYs) for 315 diseases and injuries and healthy life expectancy (HALE), 1990–2015: a …

NJ Kassebaum, M Arora, RM Barber, ZA Bhutta… - The Lancet, 2016 - thelancet.com
Background Healthy life expectancy (HALE) and disability-adjusted life-years (DALYs)
provide summary measures of health across geographies and time that can inform …

[HTML][HTML] Global, regional, and national life expectancy, all-cause mortality, and cause-specific mortality for 249 causes of death, 1980–2015: a systematic analysis for …

H Wang, M Naghavi, C Allen, RM Barber, ZA Bhutta… - The lancet, 2016 - thelancet.com
Background Improving survival and extending the longevity of life for all populations
requires timely, robust evidence on local mortality levels and trends. The Global Burden of …

Epidemiological and clinical features of laboratory-diagnosed severe fever with thrombocytopenia syndrome in China, 2011–17: a prospective observational study

H Li, QB Lu, B Xing, SF Zhang, K Liu, J Du… - The Lancet Infectious …, 2018 - thelancet.com
Background Severe fever with thrombocytopenia syndrome (SFTS) is an emerging
infectious disease with an increasing case number and extensive geographical expansion …

A serological point-of-care test for the detection of IgG antibodies against Ebola virus in human survivors

P Brangel, A Sobarzo, C Parolo, BS Miller, PD Howes… - ACS …, 2018 - ACS Publications
Ebola virus disease causes widespread and highly fatal epidemics in human populations.
Today, there is still great need for point-of-care tests for diagnosis, patient management and …

Response to COVID-19 in South Korea and implications for lifting stringent interventions

A Dighe, L Cattarino, G Cuomo-Dannenburg, J Skarp… - BMC medicine, 2020 - Springer
Background After experiencing a sharp growth in COVID-19 cases early in the pandemic,
South Korea rapidly controlled transmission while implementing less stringent national …

Spatial and temporal dynamics of superspreading events in the 2014–2015 West Africa Ebola epidemic

MSY Lau, BD Dalziel, S Funk… - Proceedings of the …, 2017 - National Acad Sciences
The unprecedented scale of the Ebola outbreak in Western Africa (2014–2015) has
prompted an explosion of efforts to understand the transmission dynamics of the virus and to …

Real-time estimation of the epidemic reproduction number: Scoping review of the applications and challenges

RK Nash, P Nouvellet, A Cori - PLOS Digital Health, 2022 - journals.plos.org
The time-varying reproduction number (Rt) is an important measure of transmissibility during
outbreaks. Estimating whether and how rapidly an outbreak is growing (Rt> 1) or declining …