Probing the mechanical properties, conformational changes, and interactions of nucleic acids with magnetic tweezers
Nucleic acids are central to the storage and transmission of genetic information. Mechanical
properties, along with their sequence, both enable and fundamentally constrain the …
properties, along with their sequence, both enable and fundamentally constrain the …
Rotating magnetic particles for lab-on-chip applications–a comprehensive review
CP Moerland, LJ Van IJzendoorn, MWJ Prins - Lab on a Chip, 2019 - pubs.rsc.org
Magnetic particles are widely used in lab-on-chip and biosensing applications, because
they have a high surface-to-volume ratio, they can be actuated with magnetic fields and …
they have a high surface-to-volume ratio, they can be actuated with magnetic fields and …
Direct observation of R-loop formation by single RNA-guided Cas9 and Cascade effector complexes
MD Szczelkun, MS Tikhomirova… - Proceedings of the …, 2014 - National Acad Sciences
Clustered, regularly interspaced, short palindromic repeats (CRISPR)/CRISPR-associated
(Cas) systems protect bacteria and archaea from infection by viruses and plasmids. Central …
(Cas) systems protect bacteria and archaea from infection by viruses and plasmids. Central …
Molecular structure, DNA binding mode, photophysical properties and recommendations for use of SYBR Gold
PJ Kolbeck, W Vanderlinden… - Nucleic acids …, 2021 - academic.oup.com
SYBR Gold is a commonly used and particularly bright fluorescent DNA stain, however, its
chemical structure is unknown and its binding mode to DNA remains controversial. Here, we …
chemical structure is unknown and its binding mode to DNA remains controversial. Here, we …
Mechanisms of small molecule–DNA interactions probed by single-molecule force spectroscopy
AA Almaqwashi, T Paramanathan… - Nucleic acids …, 2016 - academic.oup.com
There is a wide range of applications for non-covalent DNA binding ligands, and
optimization of such interactions requires detailed understanding of the binding …
optimization of such interactions requires detailed understanding of the binding …
Supercoiling-dependent DNA binding: quantitative modeling and applications to bulk and single-molecule experiments
DNA stores our genetic information and is ubiquitous in applications, where it interacts with
binding partners ranging from small molecules to large macromolecular complexes. Binding …
binding partners ranging from small molecules to large macromolecular complexes. Binding …
[HTML][HTML] An optimized software framework for real-time, high-throughput tracking of spherical beads
JP Cnossen, D Dulin, NH Dekker - Review of Scientific Instruments, 2014 - pubs.aip.org
Numerous biophysical techniques such as magnetic tweezers, flow stretching assays, or
tethered particle motion assays rely on the tracking of spherical beads to obtain quantitative …
tethered particle motion assays rely on the tracking of spherical beads to obtain quantitative …
The temperature dependence of the helical twist of DNA
F Kriegel, C Matek, T Dršata, K Kulenkampff… - Nucleic acids …, 2018 - academic.oup.com
DNA is the carrier of all cellular genetic information and increasingly used in
nanotechnology. Quantitative understanding and optimization of its functions requires …
nanotechnology. Quantitative understanding and optimization of its functions requires …
Chromatin rigidity provides mechanical and genome protection
AD Stephens - … Research/Fundamental and Molecular Mechanisms of …, 2020 - Elsevier
The nucleus is the organelle in the cell that contains the genome and its associate proteins
which is collectively called chromatin. New work has shown that chromatin and its …
which is collectively called chromatin. New work has shown that chromatin and its …
Torque spectroscopy for the study of rotary motion in biological systems
To understand the mechanistic basis of cellular function, immense efforts are undertaken to
investigate the many different molecules that constitute a cell, aiming to probe both …
investigate the many different molecules that constitute a cell, aiming to probe both …