Genotyping‐by‐sequencing approaches to characterize crop genomes: choosing the right tool for the right application

A Scheben, J Batley, D Edwards - Plant biotechnology journal, 2017 - Wiley Online Library
In the last decade, the revolution in sequencing technologies has deeply impacted crop
genotyping practice. New methods allowing rapid, high‐throughput genotyping of entire …

Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects

C Kole, M Muthamilarasan, R Henry… - Frontiers in plant …, 2015 - frontiersin.org
Climate change affects agricultural productivity worldwide. Increased prices of food
commodities are the initial indication of drastic edible yield loss, which is expected to …

Emerging genomic tools for legume breeding: current status and future prospects

MK Pandey, M Roorkiwal, VK Singh… - Frontiers in Plant …, 2016 - frontiersin.org
Legumes play a vital role in ensuring global nutritional food security and improving soil
quality through nitrogen fixation. Accelerated higher genetic gains is required to meet the …

[HTML][HTML] Exciting journey of 10 years from genomes to fields and markets: some success stories of genomics-assisted breeding in chickpea, pigeonpea and groundnut

RK Varshney - Plant Science, 2016 - Elsevier
Legume crops such as chickpea, pigeonpea and groundnut, mostly grown in marginal
environments, are the major source of nutrition and protein to the human population in Asia …

A Comprehensive Review on Chickpea (Cicer arietinum L.) Breeding for Abiotic Stress Tolerance and Climate Change Resilience

O Arriagada, F Cacciuttolo, RA Cabeza… - International Journal of …, 2022 - mdpi.com
Chickpea is one of the most important pulse crops worldwide, being an excellent source of
protein. It is grown under rain-fed conditions averaging yields of 1 t/ha, far from its potential …

Prioritization of candidate genes in “QTL-hotspot” region for drought tolerance in chickpea (Cicer arietinum L.)

SM Kale, D Jaganathan, P Ruperao, C Chen… - Scientific Reports, 2015 - nature.com
A combination of two approaches, namely QTL analysis and gene enrichment analysis were
used to identify candidate genes in the “QTL-hotspot” region for drought tolerance present …

High-density linkage map construction and mapping of seed trait QTLs in chickpea (Cicer arietinum L.) using Genotyping-by-Sequencing (GBS)

S Verma, S Gupta, N Bandhiwal, T Kumar… - Scientific reports, 2015 - nature.com
This study reports the use of Genotyping-by-Sequencing (GBS) for large-scale SNP
discovery and simultaneous genotyping of recombinant inbred lines (RILs) of an intra …

Global transcriptome and coexpression network analyses reveal cultivar‐specific molecular signatures associated with seed development and seed size/weight …

R Garg, VK Singh, MS Rajkumar, V Kumar… - The Plant …, 2017 - Wiley Online Library
Seed development is an intricate process regulated via a complex transcriptional regulatory
network. To understand the molecular mechanisms governing seed development and seed …

Genetic dissection of seed-iron and zinc concentrations in chickpea

HD Upadhyaya, D Bajaj, S Das, V Kumar… - Scientific reports, 2016 - nature.com
The SNP-based high-resolution QTL mapping mapped eight major genomic regions
harbouring robust QTLs governing seed-Fe and Zn concentrations (39.4% combined …

Construction of a high-density linkage map and fine mapping of QTL for growth in Asian seabass

L Wang, ZY Wan, B Bai, SQ Huang, E Chua, M Lee… - Scientific reports, 2015 - nature.com
A high-density genetic map is essential for comparative genomic studies and fine mapping
of QTL and can also facilitate genome sequence assembly. Here, a high density genetic …