How the evolution of multicellularity set the stage for cancer

AS Trigos, RB Pearson, AT Papenfuss… - British journal of …, 2018 - nature.com
Neoplastic growth and many of the hallmark properties of cancer are driven by the disruption
of molecular networks established during the emergence of multicellularity. Regulatory …

[HTML][HTML] From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics

S Manrubia, JA Cuesta, J Aguirre, SE Ahnert… - Physics of Life …, 2021 - Elsevier
Understanding how genotypes map onto phenotypes, fitness, and eventually organisms is
arguably the next major missing piece in a fully predictive theory of evolution. We refer to this …

Somatic mutations in early metazoan genes disrupt regulatory links between unicellular and multicellular genes in cancer

AS Trigos, RB Pearson, AT Papenfuss, DL Goode - Elife, 2019 - elifesciences.org
Extensive transcriptional alterations are observed in cancer, many of which activate core
biological processes established in unicellular organisms or suppress differentiation …

PICKLE 2.0: A human protein-protein interaction meta-database employing data integration via genetic information ontology

A Gioutlakis, MI Klapa, NK Moschonas - PloS one, 2017 - journals.plos.org
It has been acknowledged that source databases recording experimentally supported
human protein-protein interactions (PPIs) exhibit limited overlap. Thus, the reconstruction of …

[HTML][HTML] Making the right connections: network biology and plant immune system dynamics

ME McCormack, JA Lopez, TH Crocker… - Current Plant Biology, 2016 - Elsevier
Network analysis has been a recent focus in biological sciences due to its ability to
synthesize global visualizations of cellular processes and predict functions based on …

Integration of multiple biological features yields high confidence human protein interactome

K Karagoz, T Sevimoglu, KY Arga - Journal of theoretical biology, 2016 - Elsevier
The biological function of a protein is usually determined by its physical interaction with
other proteins. Protein–protein interactions (PPIs) are identified through various …

Information processing in the CNS: a supramolecular chemistry?

A Tozzi - Cognitive Neurodynamics, 2015 - Springer
How does central nervous system process information? Current theories are based on two
tenets:(a) information is transmitted by action potentials, the language by which neurons …

A proteomic network approach across the kidney stone disease reveals endoplasmic reticulum stress and crystal‐cell interaction in the kidney

B Yang, X Lu, Y Li, Y Li, D Yu, W Zhang… - Oxidative Medicine …, 2019 - Wiley Online Library
Crystal‐cell interactions are a vital step toward kidney stone formation. However, its
mechanisms remained unclear. Here, a protein‐protein interaction (PPI) network analysis of …

Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant

J Defoort, Y Van de Peer… - Nucleic acids research, 2018 - academic.oup.com
Gene regulatory networks (GRNs) consist of different molecular interactions that closely
work together to establish proper gene expression in time and space. Especially in higher …

Evolutionary framework of the human interactome: Unicellular and multicellular giant clusters

AE Vinogradov, OV Anatskaya - Biosystems, 2019 - Elsevier
The main contradiction of multicellularity (MCM) is between the unicellular (UC) and
multicellular (MC) levels. In human interactome we revealed two giant clusters with MC and …