On virus growth and form

R Zandi, B Dragnea, A Travesset, R Podgornik - Physics Reports, 2020 - Elsevier
We review approaches aimed at deciphering the physical mechanisms responsible for viral
structure and assembly. We discuss the basic principles of condensed matter physics …

Energies and pressures in viruses: contribution of nonspecific electrostatic interactions

A Šiber, AL Božič, R Podgornik - Physical chemistry chemical physics, 2012 - pubs.rsc.org
We summarize some aspects of electrostatic interactions in the context of viruses. A
simplified but, within well defined limitations, reliable approach is used to derive expressions …

Modeling viral capsid assembly

MF Hagan - Advances in Chemical Physics: Volume 155, 2014 - Wiley Online Library
Viruses play a role in a significant portion of human diseases, as well as those of other
animals, plants, and bacteria. This chapter focuses on the use of theoretical and …

Electrostatic interactions in biological DNA-related systems

AG Cherstvy - Physical Chemistry Chemical Physics, 2011 - pubs.rsc.org
In this perspective article, we focus on recent developments in the theory of charge effects in
biological DNA-related systems. The electrostatic effects on different levels of DNA …

How a virus circumvents energy barriers to form symmetric shells

S Panahandeh, S Li, L Marichal, R Leite Rubim… - ACS …, 2020 - ACS Publications
Previous self-assembly experiments on a model icosahedral plant virus have shown that,
under physiological conditions, capsid proteins initially bind to the genome through an en …

Role of surface charge density in nanoparticle-templated assembly of bromovirus protein cages

MC Daniel, IB Tsvetkova, ZT Quinkert, A Murali, M De… - ACS …, 2010 - ACS Publications
Self-assembling icosahedral protein cages have potencially useful physical and chemical
characteristics for a variety of nanotechnology applications, ranging from therapeutic or …

Pathways for virus assembly around nucleic acids

JD Perlmutter, MR Perkett, MF Hagan - Journal of molecular biology, 2014 - Elsevier
Understanding the pathways by which viral capsid proteins assemble around their genomes
could identify key intermediates as potential drug targets. In this work, we use computer …

The robust assembly of small symmetric nanoshells

J Wagner, R Zandi - Biophysical journal, 2015 - cell.com
Highly symmetric nanoshells are found in many biological systems, such as clathrin cages
and viral shells. Many studies have shown that symmetric shells appear in nature as a result …

Mechanisms of scaffold-mediated microcompartment assembly and size control

F Mohajerani, E Sayer, C Neil, K Inlow, MF Hagan - ACS nano, 2021 - ACS Publications
This article describes a theoretical and computational study of the dynamical assembly of a
protein shell around a complex consisting of many cargo molecules and long, flexible …

How simple can a model of an empty viral capsid be? Charge distributions in viral capsids

A Lošdorfer Božič, A Šiber, R Podgornik - Journal of biological physics, 2012 - Springer
We investigate and quantify salient features of the charge distributions on viral capsids. Our
analysis combines the experimentally determined capsid geometry with simple models for …