Best practices in microbial experimental evolution: using reporters and long-read sequencing to identify copy number variation in experimental evolution
Copy number variants (CNVs), comprising gene amplifications and deletions, are a
pervasive class of heritable variation. CNVs play a key role in rapid adaptation in both …
pervasive class of heritable variation. CNVs play a key role in rapid adaptation in both …
Third generation sequencing transforming plant genome research: Current trends and challenges
In recent years, third-generation sequencing (TGS) technologies have transformed
genomics and transcriptomics research, providing novel opportunities for significant …
genomics and transcriptomics research, providing novel opportunities for significant …
Sequencing accuracy and systematic errors of nanopore direct RNA sequencing
Abstract Background Direct RNA sequencing (dRNA-seq) on the Oxford Nanopore
Technologies (ONT) platforms can produce reads covering up to full-length gene transcripts …
Technologies (ONT) platforms can produce reads covering up to full-length gene transcripts …
Comparison of Nanopore and Synthesis-Based Next-Generation Sequencing Platforms for SARS-CoV-2 Variant Monitoring in Wastewater
D Garcia-Pedemonte, A Carcereny, J Gregori… - International Journal of …, 2023 - mdpi.com
Shortly after the beginning of the SARS-CoV-2 pandemic, many countries implemented
sewage sentinel systems to monitor the circulation of the virus in the population. A …
sewage sentinel systems to monitor the circulation of the virus in the population. A …
Evaluating the potential of (epi) genotype-by-low pass nanopore sequencing in dairy cattle: a study on direct genomic value and methylation analysis
O González-Recio, A López-Catalina… - Journal of Animal …, 2023 - Springer
Background Genotype-by-sequencing has been proposed as an alternative to SNP
genotyping arrays in genomic selection to obtain a high density of markers along the …
genotyping arrays in genomic selection to obtain a high density of markers along the …
HycDemux: a hybrid unsupervised approach for accurate barcoded sample demultiplexing in nanopore sequencing
DNA barcodes enable Oxford Nanopore sequencing to sequence multiple barcoded DNA
samples on a single flow cell. DNA sequences with the same barcode need to be grouped …
samples on a single flow cell. DNA sequences with the same barcode need to be grouped …
Exploring the role of polymorphic interspecies structural variants in reproductive isolation and adaptive divergence in Eucalyptus
Structural variations (SVs) play a significant role in speciation and adaptation in many
species, yet few studies have explored the prevalence and impact of different categories of …
species, yet few studies have explored the prevalence and impact of different categories of …
AAVolve: Concatenated long-read deep sequencing enables whole capsid tracking during shuffled AAV library selection
S Scott, A Westhaus, D Nazareth… - … Therapy Methods & …, 2024 - cell.com
Gene therapies using recombinant adeno-associated virus (AAV) vectors have
demonstrated considerable clinical success in the treatment of genetic disorders. Improved …
demonstrated considerable clinical success in the treatment of genetic disorders. Improved …
A telomere-to-telomere Eucalyptus regnans genome: unveiling haplotype variance in structure and genes within one of the world's tallest trees
Abstract Background Eucalyptus regnans (Mountain Ash) is an Australian native giant tree
species which form forests that are among the highest known carbon-dense biomasses in …
species which form forests that are among the highest known carbon-dense biomasses in …
Advances of high-throughput sequencing for unraveling biotechnological potential of microalgal-bacterial communities
PA Zaytsev, VA Rodin, AA Zaytseva, MI Zvereva… - Journal of Applied …, 2024 - Springer
Although established biotechnological applications of microalgae eg, the production of high-
value metabolites is based on axenic cultures, exploitation of the mutualistic consortia of …
value metabolites is based on axenic cultures, exploitation of the mutualistic consortia of …