[HTML][HTML] Negative feedback control of neuronal activity by microglia

A Badimon, HJ Strasburger, P Ayata, X Chen, A Nair… - Nature, 2020 - nature.com
Microglia, the brain's resident macrophages, help to regulate brain function by removing
dying neurons, pruning non-functional synapses, and producing ligands that support …

[HTML][HTML] Temporal progress of gene expression analysis with RNA-Seq data: A review on the relationship between computational methods

J Costa-Silva, DS Domingues, D Menotti… - Computational and …, 2023 - Elsevier
Abstract Analysis of differential gene expression from RNA-seq data has become a standard
for several research areas. The steps for the computational analysis include many data …

Epigenetic regulation of brain region-specific microglia clearance activity

P Ayata, A Badimon, HJ Strasburger, MK Duff… - Nature …, 2018 - nature.com
The rapid elimination of dying neurons and nonfunctional synapses in the brain is carried
out by microglia, the resident myeloid cells of the brain. Here we show that microglia …

The genome of Aiptasia, a sea anemone model for coral symbiosis

S Baumgarten, O Simakov… - Proceedings of the …, 2015 - National Acad Sciences
The most diverse marine ecosystems, coral reefs, depend upon a functional symbiosis
between a cnidarian animal host (the coral) and intracellular photosynthetic dinoflagellate …

Transcriptomics in toxicogenomics, part II: preprocessing and differential expression analysis for high quality data

A Federico, A Serra, MK Ha, P Kohonen, JS Choi… - Nanomaterials, 2020 - mdpi.com
Preprocessing of transcriptomics data plays a pivotal role in the development of
toxicogenomics-driven tools for chemical toxicity assessment. The generation and …

PTBP1-mediated alternative splicing regulates the inflammatory secretome and the pro-tumorigenic effects of senescent cells

A Georgilis, S Klotz, CJ Hanley, N Herranz, B Weirich… - Cancer cell, 2018 - cell.com
Oncogene-induced senescence is a potent tumor-suppressive response. Paradoxically,
senescence also induces an inflammatory secretome that promotes carcinogenesis and age …

Secreted Akkermansia muciniphila threonyl-tRNA synthetase functions to monitor and modulate immune homeostasis

SM Kim, S Park, SH Hwang, EY Lee, JH Kim, GS Lee… - Cell host & …, 2023 - cell.com
Commensal bacteria are critically involved in the establishment of tolerance against
inflammatory challenges, the molecular mechanisms of which are just being uncovered. All …

Bacteroides spp. promotes branched-chain amino acid catabolism in brown fat and inhibits obesity

N Yoshida, T Yamashita, T Osone, T Hosooka… - Iscience, 2021 - cell.com
The gut microbiome has emerged as a key regulator of obesity; however, its role in brown
adipose tissue (BAT) metabolism and association with obesity remain to be elucidated. We …

miRmine: a database of human miRNA expression profiles

B Panwar, GS Omenn, Y Guan - Bioinformatics, 2017 - academic.oup.com
Motivation MicroRNAs (miRNAs) are small non-coding RNAs that are involved in post-
transcriptional regulation of gene expression. In this high-throughput sequencing era, a …

MLL4 is required to maintain broad H3K4me3 peaks and super-enhancers at tumor suppressor genes

SS Dhar, D Zhao, T Lin, B Gu, K Pal, SJ Wu, H Alam… - Molecular cell, 2018 - cell.com
Super-enhancers are large clusters of enhancers that activate gene expression. Broad
trimethyl histone H3 lysine 4 (H3K4me3) often defines active tumor suppressor genes …