An overview on enrichment methods for cell surface proteome profiling
Y Li, H Qin, M Ye - Journal of separation science, 2020 - Wiley Online Library
Cell surface proteins are essential for many important biological processes, including cell–
cell interactions, signal transduction, and molecular transportation. With the characteristics of …
cell interactions, signal transduction, and molecular transportation. With the characteristics of …
Structural mass spectrometry of membrane proteins
AS Dafun, J Marcoux - Biochimica et Biophysica Acta (BBA)-Proteins and …, 2022 - Elsevier
The analysis of proteins and protein complexes by mass spectrometry (MS) has come a long
way since the invention of electrospray ionization (ESI) in the mid 80s. Originally used to …
way since the invention of electrospray ionization (ESI) in the mid 80s. Originally used to …
UniTmp: unified resources for transmembrane proteins
Abstract The UNIfied database of TransMembrane Proteins (UniTmp) is a comprehensive
and freely accessible resource of transmembrane protein structural information at different …
and freely accessible resource of transmembrane protein structural information at different …
Sensitive profiling of cell surface proteome by using an optimized biotinylation method
Y Li, Y Wang, J Mao, Y Yao, K Wang, Q Qiao, Z Fang… - Journal of …, 2019 - Elsevier
Cell surface proteins are responsible for many critical functions. Systematical profiling of
these proteins would provide a unique molecular fingerprint to classify cells and provide …
these proteins would provide a unique molecular fingerprint to classify cells and provide …
Comprehensive discovery of the accessible primary amino group-containing segments from cell surface proteins by fine-tuning a high-throughput biotinylation method
Cell surface proteins, including transmembrane and other surface-anchored proteins, play a
key role in several critical cellular processes and have a strong diagnostic value. The …
key role in several critical cellular processes and have a strong diagnostic value. The …
LeishMANIAdb: a comparative resource for Leishmania proteins
Leishmaniasis is a detrimental disease causing serious changes in quality of life and some
forms can lead to death. The disease is spread by the parasite Leishmania transmitted by …
forms can lead to death. The disease is spread by the parasite Leishmania transmitted by …
CIRFESS: an interactive resource for querying the set of theoretically detectable peptides for cell surface and extracellular enrichment proteomic studies
Cell surface transmembrane, extracellular, and secreted proteins are high value targets for
immunophenotyping, drug development, and studies related to intercellular communication …
immunophenotyping, drug development, and studies related to intercellular communication …
Covalently modified carboxyl side chains on cell surface leads to a novel method toward topology analysis of transmembrane proteins
A Müller, T Langó, L Turiák, A Ács, G Várady… - Scientific Reports, 2019 - nature.com
The research on transmembrane proteins (TMPs) is quite widespread due to their biological
importance. Unfortunately, only a little amount of structural data is available of TMPs. Since …
importance. Unfortunately, only a little amount of structural data is available of TMPs. Since …
APEX, a master key to resolve membrane topology in live cells
CM Yoo, HW Rhee - Biochemistry, 2019 - ACS Publications
Determining the topology of the membrane proteome is fundamental for understanding its
function at the membrane. However, conventional methods involving test tube reactions …
function at the membrane. However, conventional methods involving test tube reactions …
PolarProtPred: predicting apical and basolateral localization of transmembrane proteins using putative short linear motifs and deep learning
Motivation Cell polarity refers to the asymmetric organization of cellular components in
various cells. Epithelial cells are the best-known examples of polarized cells, featuring …
various cells. Epithelial cells are the best-known examples of polarized cells, featuring …