Implications of streamlining theory for microbial ecology

SJ Giovannoni, J Cameron Thrash… - The ISME …, 2014 - academic.oup.com
Whether a small cell, a small genome or a minimal set of chemical reactions with self-
replicating properties, simplicity is beguiling. As Leonardo da Vinci reportedly said,'simplicity …

SAR11 bacteria: the most abundant plankton in the oceans

SJ Giovannoni - Annual review of marine science, 2017 - annualreviews.org
SAR11 is a group of small, carbon-oxidizing bacteria that reach a global estimated
population size of 2.4× 1028 cells—approximately 25% of all plankton. They are found …

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

AE Parada, DM Needham… - Environmental …, 2016 - Wiley Online Library
Microbial community analysis via high‐throughput sequencing of amplified 16S rRNA genes
is an essential microbiology tool. We found the popular primer pair 515F (515F‐C) and …

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

A Apprill, S McNally, R Parsons, L Weber - Aquatic Microbial Ecology, 2015 - int-res.com
High-throughput sequencing of small subunit ribosomal RNA (SSU rRNA) genes from
marine environments is a widely applied method used to uncover the composition of …

Recalcitrant dissolved organic carbon fractions

DA Hansell - Annual review of marine science, 2013 - annualreviews.org
Marine dissolved organic carbon (DOC) exhibits a spectrum of reactivity, from very fast
turnover of the most bioavailable forms in the surface ocean to long-lived materials …

Marine bacterial, archaeal and protistan association networks reveal ecological linkages

JA Steele, PD Countway, L Xia, PD Vigil… - The ISME …, 2011 - academic.oup.com
Microbes have central roles in ocean food webs and global biogeochemical processes, yet
specific ecological relationships among these taxa are largely unknown. This is in part due …

[HTML][HTML] Marine bacterioplankton seasonal succession dynamics

C Bunse, J Pinhassi - Trends in microbiology, 2017 - cell.com
Bacterioplankton (bacteria and archaea) are indispensable regulators of global element
cycles owing to their unique ability to decompose and remineralize dissolved organic matter …

Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years

JA Cram, CET Chow, R Sachdeva… - The ISME …, 2015 - academic.oup.com
Microbial activities that affect global oceanographic and atmospheric processes happen
throughout the water column, yet the long-term ecological dynamics of microbes have been …

Microbial metatranscriptomics in a permanent marine oxygen minimum zone

FJ Stewart, O Ulloa, EF DeLong - Environmental microbiology, 2012 - Wiley Online Library
Simultaneous characterization of taxonomic composition, metabolic gene content and gene
expression in marine oxygen minimum zones (OMZs) has potential to broaden perspectives …

Seasonality in ocean microbial communities

SJ Giovannoni, KL Vergin - Science, 2012 - science.org
Ocean warming occurs every year in seasonal cycles that can help us to understand long-
term responses of plankton to climate change. Rhythmic seasonal patterns of microbial …