Functional nucleic acid biosensors utilizing rolling circle amplification

RM Bialy, A Mainguy, Y Li, JD Brennan - Chemical Society Reviews, 2022 - pubs.rsc.org
Functional nucleic acids (FNAs), including DNA aptamers and DNAzymes, are finding
increasing use as molecular recognition elements for point-of-care (POC) assays and …

The application of DNA polymerases and Cas9 as representative of DNA-modifying enzymes group in DNA sensor design

J Dronina, US Bubniene, A Ramanavicius - Biosensors and Bioelectronics, 2021 - Elsevier
Rapid detection of nucleic acids (DNA or RNA) by inexpensive, selective, accurate, and
highly sensitive methods is very important for biosensors. DNA-sensors based on DNA …

Click editing enables programmable genome writing using DNA polymerases and HUH endonucleases

J Ferreira da Silva, CJ Tou, EM King, ML Eller… - Nature …, 2024 - nature.com
Genome editing technologies based on DNA-dependent polymerases (DDPs) could offer
several benefits compared with other types of editors to install diverse edits. Here, we …

Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing

TA Clark, IA Murray, RD Morgan… - Nucleic acids …, 2012 - academic.oup.com
DNA methylation is the most common form of DNA modification in prokaryotic and eukaryotic
genomes. We have applied the method of single-molecule, real-time (SMRT®) DNA …

Processive replication of single DNA molecules in a nanopore catalyzed by phi29 DNA polymerase

KR Lieberman, GM Cherf, MJ Doody… - Journal of the …, 2010 - ACS Publications
Coupling nucleic acid processing enzymes to nanoscale pores allows controlled movement
of individual DNA or RNA strands that is reported as an ionic current/time series. Hundreds …

The catalytic mechanisms of binuclear metallohydrolases

N Mitić, SJ Smith, A Neves, LW Guddat… - Chemical …, 2006 - ACS Publications
Binuclear metallohydrolases are a structurally diverse group of enzymes that use binuclear
metal ion centers to catalyze the hydrolysis of amides and esters of carboxylic and …

Real-time DNA sequencing from single polymerase molecules

J Korlach, KP Bjornson, BP Chaudhuri, RL Cicero… - Methods in …, 2010 - Elsevier
Pacific Biosciences has developed a method for real-time sequencing of single DNA
molecules (Eid et al., 2009), with intrinsic sequencing rates of several bases per second and …

Viral and cellular interactions during adenovirus DNA replication

M Charman, C Herrmann, MD Weitzman - FEBS letters, 2019 - Wiley Online Library
Adenoviruses represent ubiquitous and clinically significant human pathogens, gene‐
delivery vectors, and oncolytic agents. The study of adenovirus‐infected cells has long been …

Rolling-circle amplification of viral DNA genomes using phi29 polymerase

R Johne, H Müller, A Rector, M van Ranst… - Trends in …, 2009 - cell.com
Techniques for the single-step amplification of whole genomes have been developed into
powerful tools for phylogenetic analyses, epidemiological studies and studies on genome …

Adenovirus DNA replication

RC Hoeben, TG Uil - Cold Spring Harbor perspectives in …, 2013 - cshperspectives.cshlp.org
Adenoviruses have attracted much attention as probes to study biological processes such as
DNA replication, transcription, splicing, and cellular transformation. More recently these …