Protein analysis by shotgun/bottom-up proteomics

Y Zhang, BR Fonslow, B Shan, MC Baek… - Chemical …, 2013 - ACS Publications
According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …

Affinity‐purification coupled to mass spectrometry: Basic principles and strategies

WH Dunham, M Mullin, AC Gingras - Proteomics, 2012 - Wiley Online Library
Identifying the interactions established by a protein of interest can be a critical step in
understanding its function. This is especially true when an unknown protein of interest is …

AF2Complex predicts direct physical interactions in multimeric proteins with deep learning

M Gao, D Nakajima An, JM Parks, J Skolnick - Nature communications, 2022 - nature.com
Accurate descriptions of protein-protein interactions are essential for understanding
biological systems. Remarkably accurate atomic structures have been recently computed for …

High-quality binary protein interaction map of the yeast interactome network

H Yu, P Braun, MA Yıldırım, I Lemmens, K Venkatesan… - Science, 2008 - science.org
Current yeast interactome network maps contain several hundred molecular complexes with
limited and somewhat controversial representation of direct binary interactions. We carried …

SSB as an organizer/mobilizer of genome maintenance complexes

RD Shereda, AG Kozlov, TM Lohman… - Critical reviews in …, 2008 - Taylor & Francis
When duplex DNA is altered in almost any way (replicated, recombined, or repaired), single
strands of DNA are usually intermediates, and single-stranded DNA binding (SSB) proteins …

Proteome organization in a genome-reduced bacterium

S Kühner, V van Noort, MJ Betts, A Leo-Macias… - Science, 2009 - science.org
The genome of Mycoplasma pneumoniae is among the smallest found in self-replicating
organisms. To study the basic principles of bacterial proteome organization, we used …

Building Fe–S proteins: bacterial strategies

B Py, F Barras - Nature Reviews Microbiology, 2010 - nature.com
The broad range of cellular activities carried out by Fe–S proteins means that they have a
central role in the life of most organisms. At the interface between biology and chemistry …

The binary protein-protein interaction landscape of Escherichia coli

SV Rajagopala, P Sikorski, A Kumar, R Mosca… - Nature …, 2014 - nature.com
Efforts to map the Escherichia coli interactome have identified several hundred
macromolecular complexes, but direct binary protein-protein interactions (PPIs) have not …

[图书][B] Structure and function of intrinsically disordered proteins

P Tompa, A Fersht - 2009 - taylorfrancis.com
The existence and functioning of intrinsically disordered proteins (IDPs) challenge the
classical structure-function paradigm that equates function with a well-defined 3D structure …

Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins

P Hu, SC Janga, M Babu, JJ Díaz-Mejía, G Butland… - PLoS …, 2009 - journals.plos.org
One-third of the 4,225 protein-coding genes of Escherichia coli K-12 remain functionally
unannotated (orphans). Many map to distant clades such as Archaea, suggesting …