Evolution of Escherichia coli Expression System in Producing Antibody Recombinant Fragments

A Sandomenico, JP Sivaccumar, M Ruvo - International Journal of …, 2020 - mdpi.com
Antibodies and antibody-derived molecules are continuously developed as both therapeutic
agents and key reagents for advanced diagnostic investigations. Their application in these …

The “beauty in the beast”—the multiple uses of Priestia megaterium in biotechnology

R Biedendieck, T Knuuti, SJ Moore, D Jahn - Applied microbiology and …, 2021 - Springer
Over 30 years, the Gram-positive bacterium Priestia megaterium (previously known as
Bacillus megaterium) was systematically developed for biotechnological applications …

Computational scoring and experimental evaluation of enzymes generated by neural networks

SR Johnson, X Fu, S Viknander, C Goldin… - Nature …, 2024 - nature.com
In recent years, generative protein sequence models have been developed to sample novel
sequences. However, predicting whether generated proteins will fold and function remains …

Enhanced Extracellular Production of IsPETase in Escherichia coli via Engineering of the pelB Signal Peptide

L Shi, H Liu, S Gao, Y Weng, L Zhu - Journal of agricultural and …, 2021 - ACS Publications
Poly (ethylene terephthalate)(PET) is one of the most commonly used plastics worldwide
and its accumulation in the environment is a global problem. PETase from Ideonella …

Parameter-efficient fine-tuning on large protein language models improves signal peptide prediction

S Zeng, D Wang, L Jiang, D Xu - Genome research, 2024 - genome.cshlp.org
Signal peptides (SPs) play a crucial role in protein translocation in cells. The development of
large protein language models (PLMs) and prompt-based learning provide a new …

Signal peptides generated by attention-based neural networks

Z Wu, KK Yang, MJ Liszka, A Lee, A Batzilla… - ACS Synthetic …, 2020 - ACS Publications
Short (15–30 residue) chains of amino acids at the amino termini of expressed proteins
known as signal peptides (SPs) specify secretion in living cells. We trained an attention …

Bacillus amyloliquefaciens: Harnessing Its Potential for Industrial, Medical, and Agricultural Applications—A Comprehensive Review

I Zalila-Kolsi, A Ben-Mahmoud, R Al-Barazie - Microorganisms, 2023 - mdpi.com
Bacillus amyloliquefaciens, a Gram-positive bacterium, has emerged as a versatile
microorganism with significant applications in various fields, including industry, medicine …

In silico Screening and Heterologous Expression of a Polyethylene Terephthalate Hydrolase (PETase)-Like Enzyme (SM14est) With Polycaprolactone (PCL)-Degrading Activity …

EL Almeida, AF Carrillo Rincón, SA Jackson… - Frontiers in …, 2019 - frontiersin.org
Plastics, such as the polyethylene terephthalate (PET), are widely used for various industrial
applications, due to their physicochemical properties which are particularly useful in the …

Exploitation of Bacillus subtilis as a robust workhorse for production of heterologous proteins and beyond

W Cui, L Han, F Suo, Z Liu, L Zhou, Z Zhou - World Journal of Microbiology …, 2018 - Springer
Bacillus subtilis, belonging to the type species of Bacillus, is a type of soil-derived, low% G+
C, endospore-forming Gram-positive bacterium. After the discovery of B. subtilis 168 that …

Developing Gram-negative bacteria for the secretion of heterologous proteins

LA Burdette, SA Leach, HT Wong… - Microbial cell …, 2018 - Springer
Gram-negative bacteria are attractive hosts for recombinant protein production because they
are fast growing, easy to manipulate, and genetically stable in large cultures. However, the …