Evolving and sustaining ocean best practices and standards for the next decade

J Pearlman, M Bushnell, L Coppola… - Frontiers in Marine …, 2019 - frontiersin.org
The oceans play a key role in global issues such as climate change, food security, and
human health. Given their vast dimensions and internal complexity, efficient monitoring and …

Emerging vaccine informatics

Y He, R Rappuoli, AS De Groot… - BioMed Research …, 2010 - Wiley Online Library
Vaccine informatics is an emerging research area that focuses on development and
applications of bioinformatics methods that can be used to facilitate every aspect of the …

The immune epitope database (IEDB) 3.0

R Vita, JA Overton, JA Greenbaum… - Nucleic acids …, 2015 - academic.oup.com
The IEDB, www. iedb. org, contains information on immune epitopes—the molecular targets
of adaptive immune responses—curated from the published literature and submitted by …

Uberon, an integrative multi-species anatomy ontology

CJ Mungall, C Torniai, GV Gkoutos, SE Lewis… - Genome biology, 2012 - Springer
We present Uberon, an integrated cross-species ontology consisting of over 6,500 classes
representing a variety of anatomical entities, organized according to traditional anatomical …

The cancer epitope database and analysis resource (CEDAR)

Z Koşaloğlu-Yalçın, N Blazeska, R Vita… - Nucleic acids …, 2023 - academic.oup.com
Abstract We established The Cancer Epitope Database and Analysis Resource (CEDAR) to
catalog all epitope data in the context of cancer. The specific molecular targets of adaptive T …

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

AD Diehl, TF Meehan, YM Bradford, MH Brush… - Journal of biomedical …, 2016 - Springer
Abstract Background The Cell Ontology (CL) is an OBO Foundry candidate ontology
covering the domain of canonical, natural biological cell types. Since its inception in 2005 …

The Semanticscience Integrated Ontology (SIO) for biomedical research and knowledge discovery

M Dumontier, CJO Baker, J Baran, A Callahan… - Journal of biomedical …, 2014 - Springer
Abstract The Semanticscience Integrated Ontology (SIO) is an ontology to facilitate
biomedical knowledge discovery. SIO features a simple upper level comprised of essential …

Patterns and severity of vincristine‐induced peripheral neuropathy in children with acute lymphoblastic leukemia

EM Lavoie Smith, L Li, CW Chiang… - Journal of the …, 2015 - Wiley Online Library
Vincristine, a critical component of combination chemotherapy treatment for pediatric acute
lymphoblastic leukemia (ALL), can lead to vincristine‐induced peripheral neuropathy …

[HTML][HTML] Using a suite of ontologies for preserving workflow-centric research objects

K Belhajjame, J Zhao, D Garijo, M Gamble… - Journal of Web …, 2015 - Elsevier
Scientific workflows are a popular mechanism for specifying and automating data-driven in
silico experiments. A significant aspect of their value lies in their potential to be reused. Once …

Finding our way through phenotypes

AR Deans, SE Lewis, E Huala, SS Anzaldo… - PLoS …, 2015 - journals.plos.org
Despite a large and multifaceted effort to understand the vast landscape of phenotypic data,
their current form inhibits productive data analysis. The lack of a community-wide …