Beyond biogeographic patterns: processes shaping the microbial landscape
CA Hanson, JA Fuhrman, MC Horner-Devine… - Nature Reviews …, 2012 - nature.com
Recently, microbiologists have established the existence of biogeographic patterns among a
wide range of microorganisms. The focus of the field is now shifting to identifying the …
wide range of microorganisms. The focus of the field is now shifting to identifying the …
Aquatic invasive species: challenges for the future
Humans have effectively transported thousands of species around the globe and, with
accelerated trade; the rate of introductions has increased over time. Aquatic ecosystems …
accelerated trade; the rate of introductions has increased over time. Aquatic ecosystems …
Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies
A Klindworth, E Pruesse, T Schweer… - Nucleic acids …, 2013 - academic.oup.com
Abstract 16S ribosomal RNA gene (rDNA) amplicon analysis remains the standard
approach for the cultivation-independent investigation of microbial diversity. The accuracy of …
approach for the cultivation-independent investigation of microbial diversity. The accuracy of …
Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria
Background Estuaries are among the most productive habitats on the planet. Bacteria in
estuary sediments control the turnover of organic carbon and the cycling of nitrogen and …
estuary sediments control the turnover of organic carbon and the cycling of nitrogen and …
Drivers of bacterial β-diversity depend on spatial scale
The factors driving β-diversity (variation in community composition) yield insights into the
maintenance of biodiversity on the planet. Here we tested whether the mechanisms that …
maintenance of biodiversity on the planet. Here we tested whether the mechanisms that …
Microbial ecology of the dark ocean above, at, and below the seafloor
The majority of life on Earth—notably, microbial life—occurs in places that do not receive
sunlight, with the habitats of the oceans being the largest of these reservoirs. Sunlight …
sunlight, with the habitats of the oceans being the largest of these reservoirs. Sunlight …
Local and regional factors influencing bacterial community assembly
ES Lindström, S Langenheder - Environmental Microbiology …, 2012 - Wiley Online Library
The classical view states that microbial biogeography is not affected by dispersal barriers or
historical events, but only influenced by the local contemporary habitat conditions (species …
historical events, but only influenced by the local contemporary habitat conditions (species …
Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes
M Kim, M Morrison, Z Yu - Journal of microbiological methods, 2011 - Elsevier
Operational taxonomic units (OTUs) are conventionally defined at a phylogenetic distance
(0.03—species, 0.05—genus, 0.10—family) based on full-length 16S rRNA gene …
(0.03—species, 0.05—genus, 0.10—family) based on full-length 16S rRNA gene …
Global diversity and biogeography of deep-sea pelagic prokaryotes
G Salazar, FM Cornejo-Castillo… - The ISME …, 2016 - academic.oup.com
The deep-sea is the largest biome of the biosphere, and contains more than half of the
whole ocean's microbes. Uncovering their general patterns of diversity and community …
whole ocean's microbes. Uncovering their general patterns of diversity and community …
Biogeography of the ecosystems of the healthy human body
Y Zhou, H Gao, KA Mihindukulasuriya, PS La Rosa… - Genome biology, 2013 - Springer
Background Characterizing the biogeography of the microbiome of healthy humans is
essential for understanding microbial associated diseases. Previous studies mainly focused …
essential for understanding microbial associated diseases. Previous studies mainly focused …