Beyond biogeographic patterns: processes shaping the microbial landscape

CA Hanson, JA Fuhrman, MC Horner-Devine… - Nature Reviews …, 2012 - nature.com
Recently, microbiologists have established the existence of biogeographic patterns among a
wide range of microorganisms. The focus of the field is now shifting to identifying the …

Aquatic invasive species: challenges for the future

JE Havel, KE Kovalenko, SM Thomaz, S Amalfitano… - Hydrobiologia, 2015 - Springer
Humans have effectively transported thousands of species around the globe and, with
accelerated trade; the rate of introductions has increased over time. Aquatic ecosystems …

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

A Klindworth, E Pruesse, T Schweer… - Nucleic acids …, 2013 - academic.oup.com
Abstract 16S ribosomal RNA gene (rDNA) amplicon analysis remains the standard
approach for the cultivation-independent investigation of microbial diversity. The accuracy of …

Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria

BJ Baker, CS Lazar, AP Teske, GJ Dick - Microbiome, 2015 - Springer
Background Estuaries are among the most productive habitats on the planet. Bacteria in
estuary sediments control the turnover of organic carbon and the cycling of nitrogen and …

Drivers of bacterial β-diversity depend on spatial scale

JBH Martiny, JA Eisen, K Penn… - Proceedings of the …, 2011 - National Acad Sciences
The factors driving β-diversity (variation in community composition) yield insights into the
maintenance of biodiversity on the planet. Here we tested whether the mechanisms that …

Microbial ecology of the dark ocean above, at, and below the seafloor

BN Orcutt, JB Sylvan, NJ Knab… - … and molecular biology …, 2011 - Am Soc Microbiol
The majority of life on Earth—notably, microbial life—occurs in places that do not receive
sunlight, with the habitats of the oceans being the largest of these reservoirs. Sunlight …

Local and regional factors influencing bacterial community assembly

ES Lindström, S Langenheder - Environmental Microbiology …, 2012 - Wiley Online Library
The classical view states that microbial biogeography is not affected by dispersal barriers or
historical events, but only influenced by the local contemporary habitat conditions (species …

Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes

M Kim, M Morrison, Z Yu - Journal of microbiological methods, 2011 - Elsevier
Operational taxonomic units (OTUs) are conventionally defined at a phylogenetic distance
(0.03—species, 0.05—genus, 0.10—family) based on full-length 16S rRNA gene …

Global diversity and biogeography of deep-sea pelagic prokaryotes

G Salazar, FM Cornejo-Castillo… - The ISME …, 2016 - academic.oup.com
The deep-sea is the largest biome of the biosphere, and contains more than half of the
whole ocean's microbes. Uncovering their general patterns of diversity and community …

Biogeography of the ecosystems of the healthy human body

Y Zhou, H Gao, KA Mihindukulasuriya, PS La Rosa… - Genome biology, 2013 - Springer
Background Characterizing the biogeography of the microbiome of healthy humans is
essential for understanding microbial associated diseases. Previous studies mainly focused …