The function of introns

M Chorev, L Carmel - Frontiers in genetics, 2012 - frontiersin.org
The intron–exon architecture of many eukaryotic genes raises the intriguing question of
whether this unique organization serves any function, or is it simply a result of the spread of …

Origin and evolution of spliceosomal introns

IB Rogozin, L Carmel, M Csuros, EV Koonin - Biology direct, 2012 - Springer
Evolution of exon-intron structure of eukaryotic genes has been a matter of long-standing,
intensive debate. The introns-early concept, later rebranded 'introns first'held that protein …

The origin of introns and their role in eukaryogenesis: a compromise solution to the introns-early versus introns-late debate?

EV Koonin - Biology direct, 2006 - Springer
Background Ever since the discovery of'genes in pieces' and mRNA splicing in eukaryotes,
origin and evolution of spliceosomal introns have been considered within the conceptual …

Origin of spliceosomal introns and alternative splicing

M Irimia, SW Roy - Cold Spring Harbor perspectives in …, 2014 - cshperspectives.cshlp.org
In this work we review the current knowledge on the prehistory, origins, and evolution of
spliceosomal introns. First, we briefly outline the major features of the different types of …

New methods for detecting lineage-specific selection

A Siepel, KS Pollard, D Haussler - Annual International Conference on …, 2006 - Springer
So far, most methods for identifying sequences under selection based on comparative
sequence data have either assumed selectional pressures are the same across all branches …

Patterns of Intron Loss and Gain in Plants: Intron Loss–Dominated Evolution and Genome-Wide Comparison of O. sativa and A. thaliana

SW Roy, D Penny - Molecular biology and evolution, 2007 - academic.oup.com
Numerous previous studies have elucidated 2 surprising patterns of spliceosomal intron
evolution in diverse eukaryotes over the past roughly 100 Myr. First, rates of recent intron …

Origins and evolution of spliceosomal introns

F Rodríguez-Trelles, R Tarrío, FJ Ayala - Annu. Rev. Genet., 2006 - annualreviews.org
Research into the origins of introns is at a critical juncture in the resolution of theories on the
evolution of early life (which came first, RNA or DNA?), the identity of LUCA (the last …

Evolution of protein domain promiscuity in eukaryotes

MK Basu, L Carmel, IB Rogozin, EV Koonin - Genome research, 2008 - genome.cshlp.org
Numerous eukaryotic proteins contain multiple domains. Certain domains show a tendency
to occur in diverse domain architectures and can be considered “promiscuous.” These …

Three distinct modes of intron dynamics in the evolution of eukaryotes

L Carmel, YI Wolf, IB Rogozin, EV Koonin - Genome research, 2007 - genome.cshlp.org
Several contrasting scenarios have been proposed for the origin and evolution of
spliceosomal introns, a hallmark of eukaryotic genes. A comprehensive probabilistic model …

Comparative genomic analysis of fungal genomes reveals intron-rich ancestors

JE Stajich, FS Dietrich, SW Roy - Genome biology, 2007 - Springer
Background Eukaryotic protein-coding genes are interrupted by spliceosomal introns, which
are removed from transcripts before protein translation. Many facets of spliceosomal intron …