neoepiscope improves neoepitope prediction with multivariant phasing
Motivation The vast majority of tools for neoepitope prediction from DNA sequencing of
complementary tumor and normal patient samples do not consider germline context or the …
complementary tumor and normal patient samples do not consider germline context or the …
Misannotated multi-nucleotide variants in public cancer genomics datasets lead to inaccurate mutation calls with significant implications
S Srinivasan, N Kalinava, R Aldana, Z Li, S van Hagen… - Cancer Research, 2021 - AACR
Although next-generation sequencing is widely used in cancer to profile tumors and detect
variants, most somatic variant callers used in these pipelines identify variants at the lowest …
variants, most somatic variant callers used in these pipelines identify variants at the lowest …
Mis-annotated multi nucleotide variants in public cancer genomics datasets can lead to inaccurate mutation calls with significant implications
S Srinivasan, N Kalinava, R Aldana, Z Li, S van Hagen… - bioRxiv, 2020 - biorxiv.org
Background Next generation sequencing is widely used in cancer to profile tumors and
detect variants. Most somatic variant callers used in these pipelines identify variants at the …
detect variants. Most somatic variant callers used in these pipelines identify variants at the …