Rescuing stalled or damaged replication forks

JTP Yeeles, J Poli, KJ Marians… - Cold Spring Harbor …, 2013 - cshperspectives.cshlp.org
In recent years, an increasing number of studies have shown that prokaryotes and
eukaryotes are armed with sophisticated mechanisms to restart stalled or collapsed …

Histone acetylation dynamics in repair of DNA double-strand breaks

S Aricthota, PP Rana, D Haldar - Frontiers in Genetics, 2022 - frontiersin.org
Packaging of eukaryotic genome into chromatin is a major obstacle to cells encountering
DNA damage caused by external or internal agents. For maintaining genomic integrity, the …

Starvation-induced proteasome assemblies in the nucleus link amino acid supply to apoptosis

M Uriarte, N Sen Nkwe, R Tremblay, O Ahmed… - Nature …, 2021 - nature.com
Eukaryotic cells have evolved highly orchestrated protein catabolic machineries responsible
for the timely and selective disposal of proteins and organelles, thereby ensuring amino acid …

Chromatin modifications and DNA repair: beyond double-strand breaks

NCM House, MR Koch, CH Freudenreich - Frontiers in genetics, 2014 - frontiersin.org
DNA repair must take place in the context of chromatin, and chromatin modifications and
DNA repair are intimately linked. The study of double-strand break repair has revealed …

The chromatin landscape around DNA double-strand breaks in yeast and its influence on DNA repair pathway choice

C Frigerio, E Di Nisio, M Galli, CV Colombo… - International Journal of …, 2023 - mdpi.com
DNA double-strand breaks (DSBs) are harmful DNA lesions, which elicit catastrophic
consequences for genome stability if not properly repaired. DSBs can be repaired by either …

Functions of ubiquitin and SUMO in DNA replication and replication stress

N García-Rodríguez, RP Wong, HD Ulrich - Frontiers in genetics, 2016 - frontiersin.org
Complete and faithful duplication of its entire genetic material is one of the essential
prerequisites for a proliferating cell to maintain genome stability. Yet, during replication DNA …

Analysis of DNA replication profiles in budding yeast and mammalian cells using DNA combing

JN Bianco, J Poli, J Saksouk, J Bacal, MJ Silva… - Methods, 2012 - Elsevier
DNA combing is a powerful method developed by Bensimon and colleagues to stretch DNA
molecules on silanized glass coverslips. This technique provides a unique way to monitor …

Cohesin and the nucleolus constrain the mobility of spontaneous repair foci

V Dion, V Kalck, A Seeber, T Schleker, SM Gasser - EMBO reports, 2013 - embopress.org
The regulation of chromatin mobility in response to DNA damage is important for
homologous recombination in yeast. Anchorage reduces rates of recombination, whereas …

Histone H3K56 acetylation, Rad52, and non-DNA repair factors control double-strand break repair choice with the sister chromatid

S Munoz-Galvan, S Jimeno, R Rothstein… - PLoS genetics, 2013 - journals.plos.org
DNA double-strand breaks (DSBs) are harmful lesions that arise mainly during replication.
The choice of the sister chromatid as the preferential repair template is critical for genome …

The role of histone modification in DNA replication-coupled Nucleosome Assembly and Cancer

Y Zhang, Q Zhang, Y Zhang, J Han - International Journal of Molecular …, 2023 - mdpi.com
Histone modification regulates replication-coupled nucleosome assembly, DNA damage
repair, and gene transcription. Changes or mutations in factors involved in nucleosome …