Software tools and approaches for compound identification of LC-MS/MS data in metabolomics

I Blaženović, T Kind, J Ji, O Fiehn - Metabolites, 2018 - mdpi.com
The annotation of small molecules remains a major challenge in untargeted mass
spectrometry-based metabolomics. We here critically discuss structured elucidation …

NORMAN guidance on suspect and non-target screening in environmental monitoring

J Hollender, EL Schymanski, L Ahrens… - Environmental Sciences …, 2023 - Springer
Increasing production and use of chemicals and awareness of their impact on ecosystems
and humans has led to large interest for broadening the knowledge on the chemical status …

Development and application of liquid chromatographic retention time indices in HRMS-based suspect and nontarget screening

R Aalizadeh, NA Alygizakis, EL Schymanski… - Analytical …, 2021 - ACS Publications
There is an increasing need for comparable and harmonized retention times (t R) in liquid
chromatography (LC) among different laboratories, to provide supplementary evidence for …

Challenges, progress and promises of metabolite annotation for LC–MS-based metabolomics

R Chaleckis, I Meister, P Zhang… - Current opinion in …, 2019 - Elsevier
Highlights•Data independent MS/MS acquisition methods improve metabolite
identification.•A step-by-step workflow is needed to assess the accuracy of metabolite …

Metabolomics in the context of plant natural products research: From sample preparation to metabolite analysis

MA Salem, L Perez de Souza, A Serag, AR Fernie… - Metabolites, 2020 - mdpi.com
Plant-derived natural products have long been considered a valuable source of lead
compounds for drug development. Natural extracts are usually composed of hundreds to …

Nutrimetabolomics: an integrative action for metabolomic analyses in human nutritional studies

MM Ulaszewska, CH Weinert… - Molecular nutrition & …, 2019 - Wiley Online Library
The life sciences are currently being transformed by an unprecedented wave of
developments in molecular analysis, which include important advances in instrumental …

Accelerating metabolite identification in natural product research: toward an ideal combination of liquid chromatography–high-resolution tandem mass spectrometry …

JL Wolfender, JM Nuzillard, JJJ Van Der Hooft… - Analytical …, 2018 - ACS Publications
Natural product research aims to characterize specialized metabolites from various living
organisms and assess their biological properties from either a chemical ecology or drug …

[HTML][HTML] A review of the pharmaceutical exposome in aquatic fauna

TH Miller, NR Bury, SF Owen, JI MacRae… - Environmental …, 2018 - Elsevier
Pharmaceuticals have been considered 'contaminants of emerging concern'for more than 20
years. In that time, many laboratory studies have sought to identify hazard and assess risk in …

Taking the leap between analytical chemistry and artificial intelligence: A tutorial review

LB Ayres, FJV Gomez, JR Linton, MF Silva… - Analytica Chimica …, 2021 - Elsevier
The last 10 years have witnessed the growth of artificial intelligence into different research
areas, emerging as a vibrant discipline with the capacity to process large amounts of …

The critical role that spectral libraries play in capturing the metabolomics community knowledge

W Bittremieux, M Wang, PC Dorrestein - Metabolomics, 2022 - Springer
Background Spectral library searching is currently the most common approach for
compound annotation in untargeted metabolomics. Spectral libraries applicable to liquid …