Vibrational spectroscopy as a probe of structure and dynamics in liquid water

HJ Bakker, JL Skinner - Chemical reviews, 2010 - ACS Publications
Water is, of course, a fascinating and important substance. For such a simple molecule, its
condensed phase properties are surprisingly complex. Here we might mention the many …

Development and current status of the CHARMM force field for nucleic acids

AD MacKerell Jr, N Banavali… - … : original Research on …, 2000 - Wiley Online Library
The CHARMM27 all‐atom force field for nucleic acids represents a highly optimized model
for investigations of nucleic acids via empirical force field calculations. The force field …

A five-site model for liquid water and the reproduction of the density anomaly by rigid, nonpolarizable potential functions

MW Mahoney, WL Jorgensen - The Journal of chemical physics, 2000 - pubs.aip.org
The ability of simple potential functions to reproduce accurately the density of liquid water
from− 37 to 100° C at 1 to 10 000 atm has been further explored. The result is the five-site …

Water modeled as an intermediate element between carbon and silicon

V Molinero, EB Moore - The Journal of Physical Chemistry B, 2009 - ACS Publications
Water and silicon are chemically dissimilar substances with common physical properties.
Their liquids display a temperature of maximum density, increased diffusivity on …

Comparison of density functional and MP2 calculations on the water monomer and dimer

K Kim, KD Jordan - The Journal of Physical Chemistry, 1994 - ACS Publications
The geometries and vibrational frequencies of the water monomer and dimer are calculated
using the MP2 method and density functional theory (DFT). The DFT calculations are carried …

Empirical force fields for biological macromolecules: overview and issues

AD MacKerell Jr - Journal of computational chemistry, 2004 - Wiley Online Library
Empirical force field‐based studies of biological macromolecules are becoming a common
tool for investigating their structure–activity relationships at an atomic level of detail. Such …

A molecular jump mechanism of water reorientation

D Laage, JT Hynes - Science, 2006 - science.org
Despite long study, a molecular picture of the mechanism of water reorientation is still
lacking. Using numerical simulations, we find support for a pathway in which the rotating …

On the molecular mechanism of water reorientation

D Laage, JT Hynes - The Journal of Physical Chemistry B, 2008 - ACS Publications
We detail and considerably extend the analysis recently presented in Science 2006, 311,
832− 835 of the molecular mechanism of water reorientation based on molecular dynamics …

Water structure from scattering experiments and simulation

T Head-Gordon, G Hura - Chemical reviews, 2002 - ACS Publications
Given the importance of water and its welldiscussed anomalies, there are a large number of
monographs, 1-4 reviews, 5, 6 and even popular literature7 that cover a much broader …

Molecular modeling and dynamics studies with explicit inclusion of electronic polarizability: theory and applications

PEM Lopes, B Roux, AD MacKerell - Theoretical Chemistry Accounts, 2009 - Springer
A current emphasis in empirical force fields is on the development of potential functions that
explicitly treat electronic polarizability. In the present article, the commonly used …