Biomolecular simulations: From dynamics and mechanisms to computational assays of biological activity
Biomolecular simulation is increasingly central to understanding and designing biological
molecules and their interactions. Detailed, physics‐based simulation methods are …
molecules and their interactions. Detailed, physics‐based simulation methods are …
Shelterin proteins and cancer
TNV Patel, R Vasan, D Gupta, J Patel… - Asian Pacific Journal of …, 2015 - koreascience.kr
The telomeric end structures of the DNA are known to contain tandem repeats of TTAGGG
sequence bound with specialised protein complex called the" shelterin complex". It …
sequence bound with specialised protein complex called the" shelterin complex". It …
Yangonin modulates lipid homeostasis, ameliorates cholestasis and cellular senescence in alcoholic liver disease via activating nuclear receptor FXR
L Kong, R Dong, K Huang, X Wang, D Wang, N Yue… - Phytomedicine, 2021 - Elsevier
Background: Alcoholic liver disease (ALD) is a progressive disease beginning with simple
steatosis but can progress to alcoholic steatohepatitis, fibrosis, cirrhosis, and even …
steatosis but can progress to alcoholic steatohepatitis, fibrosis, cirrhosis, and even …
Dynamics and recognition within a protein–DNA complex: a molecular dynamics study of the SKN-1/DNA interaction
Molecular dynamics simulations of the Caenorhabditis elegans transcription factor SKN-1
bound to its cognate DNA site show that the protein–DNA interface undergoes significant …
bound to its cognate DNA site show that the protein–DNA interface undergoes significant …
Low frequency variants associated with leukocyte telomere length in the Singapore Chinese population
The role of low frequency variants associated with telomere length homeostasis in chronic
diseases and mortalities is relatively understudied in the East-Asian population. Here we …
diseases and mortalities is relatively understudied in the East-Asian population. Here we …
Bisphenol A (BPA) binding on full‐length architectures of estrogen receptor
Y Liu, K Qu, Y Hai, C Zhao - Journal of Cellular Biochemistry, 2018 - Wiley Online Library
Previous research has shown that the major toxicity mechanism for many environment
chemicals is binding with estrogen receptor (ER) and blocking endogenous estrogen …
chemicals is binding with estrogen receptor (ER) and blocking endogenous estrogen …
Identification of the initial steps in signal transduction in the α4β2 nicotinic receptor: insights from equilibrium and nonequilibrium simulations
ASF Oliveira, DK Shoemark, HR Campello… - Structure, 2019 - cell.com
Nicotinic acetylcholine receptors (nAChRs) modulate synaptic transmission in the nervous
system. These receptors have emerged as therapeutic targets in drug discovery for treating …
system. These receptors have emerged as therapeutic targets in drug discovery for treating …
Sequence-specific dynamics of DNA response elements and their flanking sites regulate the recognition by AP-1 transcription factors
Abstract Activator proteins 1 (AP-1) comprise one of the largest families of eukaryotic basic
leucine zipper transcription factors. Despite advances in the characterization of AP-1 DNA …
leucine zipper transcription factors. Despite advances in the characterization of AP-1 DNA …
[HTML][HTML] Duplication of the mitochondrial control region is associated with increased longevity in birds
Despite a number of biochemical and lifestyle differences which should increase risk of
oxidative damage to their mitochondrial DNA (mtDNA) and thus reduce expected lifespan …
oxidative damage to their mitochondrial DNA (mtDNA) and thus reduce expected lifespan …
Molecular dynamics modelling of the interaction of a synthetic zinc-finger miniprotein with DNA
J Rodriguez, F Battistini, S Learte-Aymamí… - RSC Chemical …, 2023 - pubs.rsc.org
We report the modelling of the DNA complex of an artificial miniprotein composed of two zinc
finger modules and an AT-hook linking peptide. The computational study provides for the …
finger modules and an AT-hook linking peptide. The computational study provides for the …