mRNAs, proteins and the emerging principles of gene expression control
C Buccitelli, M Selbach - Nature Reviews Genetics, 2020 - nature.com
Gene expression involves transcription, translation and the turnover of mRNAs and proteins.
The degree to which protein abundances scale with mRNA levels and the implications in …
The degree to which protein abundances scale with mRNA levels and the implications in …
Multi-omics approaches to define calcific aortic valve disease pathogenesis
Calcific aortic valve disease sits at the confluence of multiple world-wide epidemics of aging,
obesity, diabetes, and renal dysfunction, and its prevalence is expected to nearly triple over …
obesity, diabetes, and renal dysfunction, and its prevalence is expected to nearly triple over …
Mass-spectrometry-based draft of the Arabidopsis proteome
Plants are essential for life and are extremely diverse organisms with unique molecular
capabilities. Here we present a quantitative atlas of the transcriptomes, proteomes and …
capabilities. Here we present a quantitative atlas of the transcriptomes, proteomes and …
A deep proteome and transcriptome abundance atlas of 29 healthy human tissues
Abstract Genome‐, transcriptome‐and proteome‐wide measurements provide insights into
how biological systems are regulated. However, fundamental aspects relating to which …
how biological systems are regulated. However, fundamental aspects relating to which …
Current sequence-based models capture gene expression determinants in promoters but mostly ignore distal enhancers
A Karollus, T Mauermeier, J Gagneur - Genome biology, 2023 - Springer
Background The largest sequence-based models of transcription control to date are
obtained by predicting genome-wide gene regulatory assays across the human genome …
obtained by predicting genome-wide gene regulatory assays across the human genome …
Benchmarking commonly used software suites and analysis workflows for DIA proteomics and phosphoproteomics
R Lou, Y Cao, S Li, X Lang, Y Li, Y Zhang… - Nature …, 2023 - nature.com
A plethora of software suites and multiple classes of spectral libraries have been developed
to enhance the depth and robustness of data-independent acquisition (DIA) data …
to enhance the depth and robustness of data-independent acquisition (DIA) data …
Mass spectrometry-based draft of the mouse proteome
The laboratory mouse ranks among the most important experimental systems for biomedical
research and molecular reference maps of such models are essential informational tools …
research and molecular reference maps of such models are essential informational tools …
Mass spectrometry-based proteomic landscape of rice reveals a post-transcriptional regulatory role of N6-methyladenosine
ST Li, Y Ke, Y Zhu, TY Zhu, H Huang, L Li, Z Hou… - Nature Plants, 2024 - nature.com
Rice is one of the most important staple food and model species in plant biology, yet its
quantitative proteomes are largely uncharacterized. Here we quantify the relative protein …
quantitative proteomes are largely uncharacterized. Here we quantify the relative protein …
Uncovering the impacts of alternative splicing on the proteome with current omics techniques
M Reixachs‐Solé, E Eyras - Wiley Interdisciplinary Reviews …, 2022 - Wiley Online Library
The high‐throughput sequencing of cellular RNAs has underscored a broad effect of isoform
diversification through alternative splicing on the transcriptome. Moreover, the differential …
diversification through alternative splicing on the transcriptome. Moreover, the differential …
Instrumentation at the leading edge of proteomics
The proteome, or collection of proteoforms expressed in a biological system, is dynamic and
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …
heterogeneous. As our appreciation for the complexity of the proteome has evolved, so have …