B cell phylogenetics in the single cell era

KB Hoehn, SH Kleinstein - Trends in Immunology, 2024 - cell.com
The widespread availability of single-cell RNA sequencing (scRNA-seq) has led to the
development of new methods for understanding immune responses. Single-cell …

[HTML][HTML] Recent advances in T-cell receptor repertoire analysis: bridging the gap with multimodal single-cell RNA sequencing

S Valkiers, N de Vrij, S Gielis, S Verbandt, B Ogunjimi… - ImmunoInformatics, 2022 - Elsevier
T cells exercise a multitude of functions such as cytotoxicity, secretion of immunomodulating
cytokines or regulation of tolerance, collectively resulting in an effective control of immune …

Dandelion uses the single-cell adaptive immune receptor repertoire to explore lymphocyte developmental origins

C Suo, K Polanski, E Dann, RGH Lindeboom… - Nature …, 2024 - nature.com
Assessment of single-cell gene expression (single-cell RNA sequencing) and adaptive
immune receptor (AIR) sequencing (scVDJ-seq) has been invaluable in studying …

Immunological memory diversity in the human upper airway

SI Ramirez, F Faraji, LB Hills, PG Lopez, B Goodwin… - Nature, 2024 - nature.com
The upper airway is an important site of infection, but immune memory in the human upper
airway is poorly understood, with implications for COVID-19 and many other human …

Tissue-resident CD8+ T cells drive compartmentalized and chronic autoimmune damage against CNS neurons

D Frieser, A Pignata, L Khajavi, D Shlesinger… - Science translational …, 2022 - science.org
The mechanisms underlying the chronicity of autoimmune diseases of the central nervous
system (CNS) are largely unknown. In particular, it is unclear whether tissue-resident …

Discovery and validation of human genomic safe harbor sites for gene and cell therapies

E Aznauryan, A Yermanos, E Kinzina, A Devaux… - Cell Reports …, 2022 - cell.com
Existing approaches to therapeutic gene transfer are marred by the transient nature of gene
expression following non-integrative gene delivery and by safety concerns due to the …

B-cell receptor repertoire sequencing: Deeper digging into the mechanisms and clinical aspects of immune-mediated diseases

B Zheng, Y Yang, L Chen, M Wu, S Zhou - Iscience, 2022 - cell.com
B cells play an essential role in adaptive immunity and are intimately correlated with
pleiotropic immune-mediated diseases. Each B cell occupies a unique B cell receptor …

Phenotypic determinism and stochasticity in antibody repertoires of clonally expanded plasma cells

D Neumeier, A Yermanos, A Agrafiotis… - Proceedings of the …, 2022 - National Acad Sciences
The capacity of humoral B cell-mediated immunity to effectively respond to and protect
against pathogenic infections is largely driven by the presence of a diverse repertoire of …

Single-cell immune repertoire analysis

SE Irac, MSF Soon, N Borcherding, ZK Tuong - Nature Methods, 2024 - nature.com
Single-cell T cell and B cell antigen receptor-sequencing data analysis can potentially
perform in-depth assessments of adaptive immune cells that inform on understanding …

Single-cell immune repertoire sequencing of B and T cells in murine models of infection and autoimmunity

D Shlesinger, KL Hong, G Shammas, N Page… - Genes & …, 2022 - nature.com
Adaptive immune repertoires are composed by the ensemble of B and T-cell receptors
within an individual, reflecting both past and current immune responses. Recent advances in …