Context-dependent control of alternative splicing by RNA-binding proteins

XD Fu, M Ares Jr - Nature Reviews Genetics, 2014 - nature.com
Sequence-specific RNA-binding proteins (RBPs) bind to pre-mRNA to control alternative
splicing, but it is not yet possible to read the'splicing code'that dictates splicing regulation on …

[HTML][HTML] The function of introns

M Chorev, L Carmel - Frontiers in genetics, 2012 - frontiersin.org
The intron–exon architecture of many eukaryotic genes raises the intriguing question of
whether this unique organization serves any function, or is it simply a result of the spread of …

[HTML][HTML] Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing

S Pandit, Y Zhou, L Shiue, G Coutinho-Mansfield, H Li… - Molecular cell, 2013 - cell.com
SR proteins are well-characterized RNA binding proteins that promote exon inclusion by
binding to exonic splicing enhancers (ESEs). However, it has been unclear whether …

Up-regulation of the proapoptotic caspase 2 splicing isoform by a candidate tumor suppressor, RBM5

K Fushimi, P Ray, A Kar, L Wang… - Proceedings of the …, 2008 - National Acad Sciences
Similar to many genes involved in programmed cell death (PCD), the caspase 2 (casp-2)
gene generates both proapoptotic and antiapoptotic isoforms by alternative splicing. Using a …

Distributions of selectively constrained sites and deleterious mutation rates in the hominid and murid genomes

L Eőry, DL Halligan, PD Keightley - Molecular Biology and …, 2010 - academic.oup.com
Protein-coding sequences make up only about 1% of the mammalian genome. Much of the
remaining 99% has been long assumed to be junk DNA, with little or no functional …

Systematic analysis of intron size and abundance parameters in diverse lineages

W JiaYan, X JingFa, W LingPing, Z Jun… - Science China Life …, 2013 - Springer
All eukaryotic genomes have genes with introns in variable sizes. As far as spliceosomal
introns are concerned, there are at least three basic parameters to stratify introns across …

Intergenic Alu exonisation facilitates the evolution of tissue-specific transcript ends

M Tajnik, A Vigilante, S Braun, H Hänel… - Nucleic acids …, 2015 - academic.oup.com
Abstract The 3′ untranslated regions (3′ UTRs) of transcripts serve as important hubs for
posttranscriptional gene expression regulation. Here, we find that the exonisation of …

An important class of intron retention events in human erythroblasts is regulated by cryptic exons proposed to function as splicing decoys

M Parra, BW Booth, R Weiszmann, B Yee, GW Yeo… - Rna, 2018 - rnajournal.cshlp.org
During terminal erythropoiesis, the splicing machinery in differentiating erythroblasts
executes a robust intron retention (IR) program that impacts expression of hundreds of …

[HTML][HTML] Identification of Small Molecule and Genetic Modulators of AON-Induced Dystrophin Exon Skipping by High-Throughput Screening

DA O'Leary, O Sharif, P Anderson, B Tu, G Welch… - PloS one, 2009 - journals.plos.org
One therapeutic approach to Duchenne Muscular Dystrophy (DMD) recently entering clinical
trials aims to convert DMD phenotypes to that of a milder disease variant, Becker Muscular …

Unannotated splicing regulatory elements in deep intron space

JG Conboy - Wiley Interdisciplinary Reviews: RNA, 2021 - Wiley Online Library
Deep intron space harbors a diverse array of splicing regulatory elements that cooperate
with better‐known exon‐proximal elements to enforce proper tissue‐specific and …