Context-dependent control of alternative splicing by RNA-binding proteins
XD Fu, M Ares Jr - Nature Reviews Genetics, 2014 - nature.com
Sequence-specific RNA-binding proteins (RBPs) bind to pre-mRNA to control alternative
splicing, but it is not yet possible to read the'splicing code'that dictates splicing regulation on …
splicing, but it is not yet possible to read the'splicing code'that dictates splicing regulation on …
[HTML][HTML] The function of introns
The intron–exon architecture of many eukaryotic genes raises the intriguing question of
whether this unique organization serves any function, or is it simply a result of the spread of …
whether this unique organization serves any function, or is it simply a result of the spread of …
[HTML][HTML] Genome-wide analysis reveals SR protein cooperation and competition in regulated splicing
S Pandit, Y Zhou, L Shiue, G Coutinho-Mansfield, H Li… - Molecular cell, 2013 - cell.com
SR proteins are well-characterized RNA binding proteins that promote exon inclusion by
binding to exonic splicing enhancers (ESEs). However, it has been unclear whether …
binding to exonic splicing enhancers (ESEs). However, it has been unclear whether …
Up-regulation of the proapoptotic caspase 2 splicing isoform by a candidate tumor suppressor, RBM5
Similar to many genes involved in programmed cell death (PCD), the caspase 2 (casp-2)
gene generates both proapoptotic and antiapoptotic isoforms by alternative splicing. Using a …
gene generates both proapoptotic and antiapoptotic isoforms by alternative splicing. Using a …
Distributions of selectively constrained sites and deleterious mutation rates in the hominid and murid genomes
Protein-coding sequences make up only about 1% of the mammalian genome. Much of the
remaining 99% has been long assumed to be junk DNA, with little or no functional …
remaining 99% has been long assumed to be junk DNA, with little or no functional …
Systematic analysis of intron size and abundance parameters in diverse lineages
All eukaryotic genomes have genes with introns in variable sizes. As far as spliceosomal
introns are concerned, there are at least three basic parameters to stratify introns across …
introns are concerned, there are at least three basic parameters to stratify introns across …
Intergenic Alu exonisation facilitates the evolution of tissue-specific transcript ends
M Tajnik, A Vigilante, S Braun, H Hänel… - Nucleic acids …, 2015 - academic.oup.com
Abstract The 3′ untranslated regions (3′ UTRs) of transcripts serve as important hubs for
posttranscriptional gene expression regulation. Here, we find that the exonisation of …
posttranscriptional gene expression regulation. Here, we find that the exonisation of …
An important class of intron retention events in human erythroblasts is regulated by cryptic exons proposed to function as splicing decoys
M Parra, BW Booth, R Weiszmann, B Yee, GW Yeo… - Rna, 2018 - rnajournal.cshlp.org
During terminal erythropoiesis, the splicing machinery in differentiating erythroblasts
executes a robust intron retention (IR) program that impacts expression of hundreds of …
executes a robust intron retention (IR) program that impacts expression of hundreds of …
[HTML][HTML] Identification of Small Molecule and Genetic Modulators of AON-Induced Dystrophin Exon Skipping by High-Throughput Screening
DA O'Leary, O Sharif, P Anderson, B Tu, G Welch… - PloS one, 2009 - journals.plos.org
One therapeutic approach to Duchenne Muscular Dystrophy (DMD) recently entering clinical
trials aims to convert DMD phenotypes to that of a milder disease variant, Becker Muscular …
trials aims to convert DMD phenotypes to that of a milder disease variant, Becker Muscular …
Unannotated splicing regulatory elements in deep intron space
JG Conboy - Wiley Interdisciplinary Reviews: RNA, 2021 - Wiley Online Library
Deep intron space harbors a diverse array of splicing regulatory elements that cooperate
with better‐known exon‐proximal elements to enforce proper tissue‐specific and …
with better‐known exon‐proximal elements to enforce proper tissue‐specific and …