Genome sequencing and population genomics in non-model organisms
H Ellegren - Trends in ecology & evolution, 2014 - cell.com
High-throughput sequencing technologies are revolutionizing the life sciences. The past 12
months have seen a burst of genome sequences from non-model organisms, in each case …
months have seen a burst of genome sequences from non-model organisms, in each case …
A field guide to whole‐genome sequencing, assembly and annotation
Genome sequencing projects were long confined to biomedical model organisms and
required the concerted effort of large consortia. Rapid progress in high‐throughput …
required the concerted effort of large consortia. Rapid progress in high‐throughput …
RaGOO: fast and accurate reference-guided scaffolding of draft genomes
We present RaGOO, a reference-guided contig ordering and orienting tool that leverages
the speed and sensitivity of Minimap2 to accurately achieve chromosome-scale assemblies …
the speed and sensitivity of Minimap2 to accurately achieve chromosome-scale assemblies …
Earth BioGenome Project: Sequencing life for the future of life
Increasing our understanding of Earth's biodiversity and responsibly stewarding its
resources are among the most crucial scientific and social challenges of the new …
resources are among the most crucial scientific and social challenges of the new …
Comparative genomics reveals insights into avian genome evolution and adaptation
Birds are the most species-rich class of tetrapod vertebrates and have wide relevance
across many research fields. We explored bird macroevolution using full genomes from 48 …
across many research fields. We explored bird macroevolution using full genomes from 48 …
The Genome 10K Project: a way forward
KP Koepfli, B Paten… - Annu. Rev. Anim …, 2015 - annualreviews.org
The Genome 10K Project was established in 2009 by a consortium of biologists and
genome scientists determined to facilitate the sequencing and analysis of the complete …
genome scientists determined to facilitate the sequencing and analysis of the complete …
How to identify sex chromosomes and their turnover
Although sex is a fundamental component of eukaryotic reproduction, the genetic systems
that control sex determination are highly variable. In many organisms the presence of sex …
that control sex determination are highly variable. In many organisms the presence of sex …
MeDuSa: a multi-draft based scaffolder
Motivation: Completing the genome sequence of an organism is an important task in
comparative, functional and structural genomics. However, this remains a challenging issue …
comparative, functional and structural genomics. However, this remains a challenging issue …
Introducing BASE: the Biomes of Australian Soil Environments soil microbial diversity database
Background Microbial inhabitants of soils are important to ecosystem and planetary
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
functions, yet there are large gaps in our knowledge of their diversity and ecology. The …
Navigating microbiological food safety in the era of whole-genome sequencing
The epidemiological investigation of a foodborne outbreak, including identification of related
cases, source attribution, and development of intervention strategies, relies heavily on the …
cases, source attribution, and development of intervention strategies, relies heavily on the …