[HTML][HTML] Fundamental behaviors emerge from simulations of a living minimal cell
ZR Thornburg, DM Bianchi, TA Brier, BR Gilbert… - Cell, 2022 - cell.com
We present a whole-cell fully dynamical kinetic model (WCM) of JCVI-syn3A, a minimal cell
with a reduced genome of 493 genes that has retained few regulatory proteins or small …
with a reduced genome of 493 genes that has retained few regulatory proteins or small …
Bacterial genome reductions: Tools, applications, and challenges
N LeBlanc, TC Charles - Frontiers in Genome Editing, 2022 - frontiersin.org
Bacterial cells are widely used to produce value-added products due to their versatility, ease
of manipulation, and the abundance of genome engineering tools. However, the efficiency of …
of manipulation, and the abundance of genome engineering tools. However, the efficiency of …
Mesoplasma florum: a near-minimal model organism for systems and synthetic biology
D Matteau, A Duval, V Baby, S Rodrigue - Frontiers in Genetics, 2024 - frontiersin.org
Mesoplasma florum is an emerging model organism for systems and synthetic biology due
to its small genome (∼ 800 kb) and fast growth rate. While M. florum was isolated and first …
to its small genome (∼ 800 kb) and fast growth rate. While M. florum was isolated and first …
Genome‐scale metabolic modeling reveals key features of a minimal gene set
JC Lachance, D Matteau, J Brodeur… - Molecular systems …, 2021 - embopress.org
Mesoplasma florum, a fast‐growing near‐minimal organism, is a compelling model to
explore rational genome designs. Using sequence and structural homology, the set of …
explore rational genome designs. Using sequence and structural homology, the set of …
Toward the complete functional characterization of a minimal bacterial proteome
DM Bianchi, JF Pelletier, CA Hutchison III… - The Journal of …, 2022 - ACS Publications
Recently, we presented a whole-cell kinetic model of the genetically minimal bacterium JCVI-
syn3A that described the coupled metabolic and genetic information processes and …
syn3A that described the coupled metabolic and genetic information processes and …
Generating chromosome geometries in a minimal cell from cryo-electron tomograms and chromosome conformation capture maps
BR Gilbert, ZR Thornburg, V Lam… - Frontiers in Molecular …, 2021 - frontiersin.org
JCVI-syn3A is a genetically minimal bacterial cell, consisting of 493 genes and only a single
543 kbp circular chromosome. Syn3A's genome and physical size are approximately one …
543 kbp circular chromosome. Syn3A's genome and physical size are approximately one …
Spurious regulatory connections dictate the expression‐fitness landscape of translation factors
JB Lalanne, DJ Parker, GW Li - Molecular Systems Biology, 2021 - embopress.org
During steady‐state cell growth, individual enzymatic fluxes can be directly inferred from
growth rate by mass conservation, but the inverse problem remains unsolved. Perturbing the …
growth rate by mass conservation, but the inverse problem remains unsolved. Perturbing the …
Experimental tests of functional molecular regeneration via a standard framework for coordinating synthetic cell building
The construction of synthetic cells from lifeless ensembles of molecules is expected to
require integration of hundreds of genetically-encoded functions whose collective capacities …
require integration of hundreds of genetically-encoded functions whose collective capacities …
[PDF][PDF] A tuneable minimal cell membrane reveals that two lipids suffice for life
I Justice, JP Saenz - bioRxiv, 2023 - biorxiv.org
All cells are encapsulated by a lipid membrane which facilitates the interaction between life
and its environment. How life exploits the diverse mixtures of lipids that dictate membrane …
and its environment. How life exploits the diverse mixtures of lipids that dictate membrane …
Recent advances in the characterization of essential genes and development of a database of essential genes
Over the past few decades, there has been a significant interest in the study of essential
genes, which are crucial for the survival of an organism under specific environmental …
genes, which are crucial for the survival of an organism under specific environmental …