[HTML][HTML] Computational methods to predict protein aggregation

S Navarro, S Ventura - Current Opinion in Structural Biology, 2022 - Elsevier
In most cases, protein aggregation stems from the establishment of non-native
intermolecular contacts. The formation of insoluble protein aggregates is associated with …

Dysregulation of RNA binding protein aggregation in neurodegenerative disorders

B Maziuk, HI Ballance, B Wolozin - Frontiers in molecular …, 2017 - frontiersin.org
The unique biology of RNA binding proteins is altering our view of the genesis of protein
misfolding diseases. These proteins use aggregation of low complexity domains (LCDs) as …

Transcript errors generate amyloid-like proteins in huwman cells

CS Chung, Y Kou, SJ Shemtov, BM Verheijen… - Nature …, 2024 - nature.com
Aging is characterized by the accumulation of proteins that display amyloid-like behavior.
However, the molecular mechanisms by which these proteins arise remain unclear. Here …

Computational resources for identifying and describing proteins driving liquid–liquid phase separation

R Pancsa, W Vranken, B Mészáros - Briefings in Bioinformatics, 2021 - academic.oup.com
One of the most intriguing fields emerging in current molecular biology is the study of
membraneless organelles formed via liquid–liquid phase separation (LLPS). These …

Protein aggregation: in silico algorithms and applications

R Prabakaran, P Rawat, AM Thangakani, S Kumar… - Biophysical …, 2021 - Springer
Protein aggregation is a topic of immense interest to the scientific community due to its role
in several neurodegenerative diseases/disorders and industrial importance. Several in silico …

Expression of the RNA-binding protein RBP10 promotes the bloodstream-form differentiation state in Trypanosoma brucei

E Mugo, C Clayton - PLoS pathogens, 2017 - journals.plos.org
In nearly all eukaryotes, cellular differentiation is governed by changes in transcription, and
stabilized by chromatin and DNA modification. Gene expression control in the pathogen …

Prion‐like proteins: from computational approaches to proteome‐wide analysis

M Gil‐Garcia, V Iglesias, I Pallarès, S Ventura - FEBS open bio, 2021 - Wiley Online Library
Prions are self‐perpetuating proteins able to switch between a soluble state and an
aggregated‐and‐transmissible conformation. These proteinaceous entities have been …

Discovering Putative Prion-Like Proteins in Plasmodium falciparum: A Computational and Experimental Analysis

I Pallarès, NS De Groot, V Iglesias… - Frontiers in …, 2018 - frontiersin.org
Prions are a singular subset of proteins able to switch between a soluble conformation and a
self-perpetuating amyloid state. Traditionally associated with neurodegenerative diseases …

Amyloids or prions? That is the question

R Sabate, F Rousseau, J Schymkowitz, C Batlle… - Prion, 2015 - Taylor & Francis
Despite major efforts devoted to understanding the phenomenon of prion transmissibility, it
is still poorly understood how this property is encoded in the amino acid sequence. In recent …

Prions and Prion-like assemblies in neurodegeneration and immunity: The emergence of universal mechanisms across health and disease

A O'Carroll, J Coyle, Y Gambin - Seminars in Cell & Developmental …, 2020 - Elsevier
Prion-like behaviour is an abrupt process, an “all-or-nothing” transition between a
monomeric species and an “infinite” fibrillated form. Once a nucleation point is formed, the …