Enhancer redundancy in development and disease

EZ Kvon, R Waymack, M Gad, Z Wunderlich - Nature Reviews Genetics, 2021 - nature.com
Shadow enhancers are seemingly redundant transcriptional cis-regulatory elements that
regulate the same gene and drive overlapping expression patterns. Recent studies have …

Neuronal cell-type classification: challenges, opportunities and the path forward

H Zeng, JR Sanes - Nature Reviews Neuroscience, 2017 - nature.com
Neurons have diverse molecular, morphological, connectional and functional properties. We
believe that the only realistic way to manage this complexity—and thereby pave the way for …

Transcriptional enhancers: from properties to genome-wide predictions

D Shlyueva, G Stampfel, A Stark - Nature Reviews Genetics, 2014 - nature.com
Cellular development, morphology and function are governed by precise patterns of gene
expression. These are established by the coordinated action of genomic regulatory …

[HTML][HTML] Absence of a simple code: how transcription factors read the genome

M Slattery, T Zhou, L Yang, ACD Machado… - Trends in biochemical …, 2014 - cell.com
Transcription factors (TFs) influence cell fate by interpreting the regulatory DNA within a
genome. TFs recognize DNA in a specific manner; the mechanisms underlying this …

[HTML][HTML] A library of MiMICs allows tagging of genes and reversible, spatial and temporal knockdown of proteins in Drosophila

S Nagarkar-Jaiswal, PT Lee, ME Campbell, K Chen… - elife, 2015 - elifesciences.org
Here, we document a collection of∼ 7434 MiMIC (Minos Mediated Integration Cassette)
insertions of which 2854 are inserted in coding introns. They allowed us to create a library of …

Genome-scale functional characterization of Drosophila developmental enhancers in vivo

EZ Kvon, T Kazmar, G Stampfel, JO Yáñez-Cuna… - Nature, 2014 - nature.com
Transcriptional enhancers are crucial regulators of gene expression and animal
development and the characterization of their genomic organization, spatiotemporal …

[HTML][HTML] Regulatory landscaping: how enhancer-promoter communication is sculpted in 3D

MI Robson, AR Ringel, S Mundlos - Molecular cell, 2019 - cell.com
During embryogenesis, precise gene transcription in space and time requires that distal
enhancers and promoters communicate by physical proximity within gene regulatory …

Ancient Ethiopian genome reveals extensive Eurasian admixture in Eastern Africa

MG Llorente, ER Jones, A Eriksson, V Siska, KW Arthur… - Science, 2015 - science.org
Characterizing genetic diversity in Africa is a crucial step for most analyses reconstructing
the evolutionary history of anatomically modern humans. However, historic migrations from …

[HTML][HTML] The wiring diagram of a glomerular olfactory system

ME Berck, A Khandelwal, L Claus, L Hernandez-Nunez… - Elife, 2016 - elifesciences.org
The sense of smell enables animals to react to long-distance cues according to learned and
innate valences. Here, we have mapped with electron microscopy the complete wiring …

In pursuit of design principles of regulatory sequences

M Levo, E Segal - Nature Reviews Genetics, 2014 - nature.com
Instructions for when, where and to what level each gene should be expressed are encoded
within regulatory sequences. The importance of motifs recognized by DNA-binding …