[HTML][HTML] Recent advances in RNA folding
In the realm of nucleic acid structures, secondary structure forms a conceptually important
intermediate level of description and explains the dominating part of the free energy of …
intermediate level of description and explains the dominating part of the free energy of …
Multiple sequence alignment-based RNA language model and its application to structural inference
Compared with proteins, DNA and RNA are more difficult languages to interpret because
four-letter coded DNA/RNA sequences have less information content than 20-letter coded …
four-letter coded DNA/RNA sequences have less information content than 20-letter coded …
[HTML][HTML] BC200 (BCYRN1)–The shortest, long, non-coding RNA associated with cancer
J Samson, S Cronin, K Dean - Non-coding RNA research, 2018 - Elsevier
With the discovery that the level of RNA synthesis in human cells far exceeds what is
required to express protein-coding genes, there has been a concerted scientific effort to …
required to express protein-coding genes, there has been a concerted scientific effort to …
Novel ribozymes: discovery, catalytic mechanisms, and the quest to understand biological function
CE Weinberg, Z Weinberg… - Nucleic acids research, 2019 - academic.oup.com
Small endonucleolytic ribozymes promote the self-cleavage of their own phosphodiester
backbone at a specific linkage. The structures of and the reactions catalysed by members of …
backbone at a specific linkage. The structures of and the reactions catalysed by members of …
RNA snp: efficient detection of local RNA secondary structure changes induced by SNP s
R Sabarinathan, H Tafer, SE Seemann… - Human …, 2013 - Wiley Online Library
Structural characteristics are essential for the functioning of many noncoding RNA s and cis‐
regulatory elements of m RNA s. SNP s may disrupt these structures, interfere with their …
regulatory elements of m RNA s. SNP s may disrupt these structures, interfere with their …
RNAcmap: a fully automatic pipeline for predicting contact maps of RNAs by evolutionary coupling analysis
Motivation The accuracy of RNA secondary and tertiary structure prediction can be
significantly improved by using structural restraints derived from evolutionary coupling or …
significantly improved by using structural restraints derived from evolutionary coupling or …
A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti
JP Schlüter, J Reinkensmeier, S Daschkey… - BMC genomics, 2010 - Springer
Abstract Background Small untranslated RNAs (sRNAs) are widespread regulators of gene
expression in bacteria. This study reports on a comprehensive screen for sRNAs in the …
expression in bacteria. This study reports on a comprehensive screen for sRNAs in the …
[HTML][HTML] Conservation of a triple-helix-forming RNA stability element in noncoding and genomic RNAs of diverse viruses
KT Tycowski, MD Shu, S Borah, M Shi, JA Steitz - Cell reports, 2012 - cell.com
Abundant expression of the long noncoding (lnc) PAN (polyadenylated nuclear) RNA by the
human oncogenic gammaherpesvirus Kaposi's sarcoma-associated herpesvirus (KSHV) …
human oncogenic gammaherpesvirus Kaposi's sarcoma-associated herpesvirus (KSHV) …
[HTML][HTML] The expansion of animal microRNA families revisited
J Hertel, PF Stadler - Life, 2015 - mdpi.com
MicroRNAs are important regulatory small RNAs in many eukaryotes. Due to their small size
and simple structure, they are readily innovated de novo. Throughout the evolution of …
and simple structure, they are readily innovated de novo. Throughout the evolution of …
GLASSgo–automated and reliable detection of sRNA homologs from a single input sequence
Bacterial small RNAs (sRNAs) are important post-transcriptional regulators of gene
expression. The functional and evolutionary characterization of sRNAs requires the …
expression. The functional and evolutionary characterization of sRNAs requires the …