Analyses of intestinal microbiota: culture versus sequencing
A Hiergeist, J Gläsner, U Reischl, A Gessner - ILAR journal, 2015 - academic.oup.com
Analyzing human as well as animal microbiota composition has gained growing interest
because structural components and metabolites of microorganisms fundamentally influence …
because structural components and metabolites of microorganisms fundamentally influence …
Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data
Abstract 16S ribosomal RNA-based analysis is the established standard for elucidating the
composition of microbial communities. While short-read 16S rRNA analyses are largely …
composition of microbial communities. While short-read 16S rRNA analyses are largely …
[HTML][HTML] Selection of microorganisms capable of polyethylene (PE) and polypropylene (PP) degradation
M Wróbel, S Szymańska, T Kowalkowski… - Microbiological …, 2023 - Elsevier
Microorganisms degrade microplastics, but their potential is still not fully exploited, eg, due
to inadequate selection of microorganisms. We developed an effective selection method of …
to inadequate selection of microorganisms. We developed an effective selection method of …
Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants
Background The source inoculum of gastrointestinal tract (GIT) microbes is largely
influenced by delivery mode in full-term infants, but these influences may be decoupled in …
influenced by delivery mode in full-term infants, but these influences may be decoupled in …
Distinct polysaccharide utilization determines interspecies competition between intestinal Prevotella spp.
EJC Gálvez, A Iljazovic, L Amend, TR Lesker… - Cell Host & Microbe, 2020 - cell.com
Prevotella spp. are a dominant bacterial genus within the human gut. Multiple Prevotella
spp. co-exist in some individuals, particularly those consuming plant-based diets …
spp. co-exist in some individuals, particularly those consuming plant-based diets …
Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system
PD Schloss, ML Jenior, CC Koumpouras, SL Westcott… - PeerJ, 2016 - peerj.com
Over the past 10 years, microbial ecologists have largely abandoned sequencing 16S rRNA
genes by the Sanger sequencing method and have instead adopted highly parallelized …
genes by the Sanger sequencing method and have instead adopted highly parallelized …
Genome reduction in an abundant and ubiquitous soil bacterium 'Candidatus Udaeobacter copiosus'
Although bacteria within the Verrucomicrobia phylum are pervasive in soils around the
world, they are under-represented in both isolate collections and genomic databases. Here …
world, they are under-represented in both isolate collections and genomic databases. Here …
Organic matter processing by microbial communities throughout the Atlantic water column as revealed by metaproteomics
K Bergauer, A Fernandez-Guerra… - Proceedings of the …, 2018 - National Acad Sciences
The phylogenetic composition of the heterotrophic microbial community is depth stratified in
the oceanic water column down to abyssopelagic layers. In the layers below the euphotic …
the oceanic water column down to abyssopelagic layers. In the layers below the euphotic …
A dynamic microbial community with high functional redundancy inhabits the cold, oxic subseafloor aquifer
The rock-hosted subseafloor crustal aquifer harbors a reservoir of microbial life that may
influence global marine biogeochemical cycles. Here we utilized metagenomic libraries of …
influence global marine biogeochemical cycles. Here we utilized metagenomic libraries of …
Status of the archaeal and bacterial census: an update
ABSTRACT A census is typically carried out for people across a range of geographical
levels; however, microbial ecologists have implemented a molecular census of bacteria and …
levels; however, microbial ecologists have implemented a molecular census of bacteria and …