Diverse functions of restriction-modification systems in addition to cellular defense

K Vasu, V Nagaraja - Microbiology and molecular biology reviews, 2013 - Am Soc Microbiol
Restriction-modification (RM) systems are ubiquitous and are often considered primitive
immune systems in bacteria. Their diversity and prevalence across the prokaryotic kingdom …

Deciphering bacterial epigenomes using modern sequencing technologies

J Beaulaurier, EE Schadt, G Fang - Nature Reviews Genetics, 2019 - nature.com
Prokaryotic DNA contains three types of methylation: N6-methyladenine, N4-methylcytosine
and 5-methylcytosine. The lack of tools to analyse the frequency and distribution of …

Beyond restriction modification: epigenomic roles of DNA methylation in prokaryotes

BP Anton, RJ Roberts - Annual Review of Microbiology, 2021 - annualreviews.org
The amount of bacterial and archaeal genome sequence and methylome data has greatly
increased over the last decade, enabling new insights into the functional roles of DNA …

To be or not to be: regulation of restriction–modification systems and other toxin–antitoxin systems

I Mruk, I Kobayashi - Nucleic acids research, 2014 - academic.oup.com
One of the simplest classes of genes involved in programmed death is that containing the
toxin–antitoxin (TA) systems of prokaryotes. These systems are composed of an intracellular …

Virulence Factors of Helicobacter pylori: A Review

BM Roesler, EMA Rabelo-Gonçalves… - Clinical Medicine …, 2014 - journals.sagepub.com
Helicobacter pylori is a spiral-shaped Gram-negative bacterium that colonizes the human
stomach and can establish a long-term infection of the gastric mucosa, a condition that …

Antibiotic resistance and epigenetics: more to it than meets the eye

D Ghosh, B Veeraraghavan, R Elangovan… - Antimicrobial agents …, 2020 - Am Soc Microbiol
The discovery of antibiotics in the last century is considered one of the most important
achievements in the history of medicine. Antibiotic usage has significantly reduced morbidity …

The role of variable DNA tandem repeats in bacterial adaptation

K Zhou, A Aertsen, CW Michiels - FEMS microbiology reviews, 2014 - academic.oup.com
DNA tandem repeats (TRs), also designated as satellite DNA, are inter-or intragenic
nucleotide sequences that are repeated two or more times in a head-to-tail manner …

Epigenetic regulation of virulence and immunoevasion by phase-variable restriction-modification systems in bacterial pathogens

KL Seib, YN Srikhanta, JM Atack… - Annual Review of …, 2020 - annualreviews.org
Human-adapted bacterial pathogens use a mechanism called phase variation to randomly
switch the expression of individual genes to generate a phenotypically diverse population to …

Antimicrobial resistance and mechanisms of epigenetic regulation

X Wang, D Yu, L Chen - Frontiers in Cellular and Infection …, 2023 - frontiersin.org
The rampant use of antibiotics in animal husbandry, farming and clinical disease treatment
has led to a significant issue with pathogen resistance worldwide over the past decades …

Prokaryotic DNA methylation and its functional roles

HJ Seong, SW Han, WJ Sul - Journal of Microbiology, 2021 - Springer
DNA methylation is known as a universal mechanism of epigenetic regulation in all
kingdoms of life. Particularly, given that prokaryotes lack key elements such as histones and …