ER-phagy: mechanisms, regulation, and diseases connected to the lysosomal clearance of the endoplasmic reticulum

F Reggiori, M Molinari - Physiological reviews, 2022 - journals.physiology.org
ER-phagy (reticulophagy) defines the degradation of portions of the endoplasmic reticulum
(ER) within lysosomes or vacuoles. It is part of the self-digestion (ie, autophagic) programs …

A guide to the regulation of selective autophagy receptors

A Gubas, I Dikic - The FEBS journal, 2022 - Wiley Online Library
Autophagy is a highly conserved catabolic process cells use to maintain their homeostasis
by degrading misfolded, damaged and excessive proteins, nonfunctional organelles, foreign …

In situ structural analysis reveals membrane shape transitions during autophagosome formation

A Bieber, C Capitanio, PS Erdmann… - Proceedings of the …, 2022 - National Acad Sciences
Autophagosomes are unique organelles that form de novo as double-membrane vesicles
engulfing cytosolic material for destruction. Their biogenesis involves membrane …

LC3-associated endocytosis and the functions of Rubicon and ATG16L1

J Magné, DR Green - Science advances, 2022 - science.org
LC3-associated endocytosis (LANDO) is a noncanonical function of the autophagy
machinery, in which LC3 (microtubule-associated protein light chain) is conjugated to rab5 …

Condensation of Ede1 promotes the initiation of endocytosis

M Kozak, M Kaksonen - Elife, 2022 - elifesciences.org
Clathrin-mediated endocytosis is initiated by a network of weakly interacting proteins
through a poorly understood mechanism. Ede1, the yeast homolog of mammalian Eps15, is …

AlphaFold2-multimer guided high-accuracy prediction of typical and atypical ATG8-binding motifs

T Ibrahim, V Khandare, FG Mirkin, Y Tumtas… - PloS Biology, 2023 - journals.plos.org
Macroautophagy/autophagy is an intracellular degradation process central to cellular
homeostasis and defense against pathogens in eukaryotic cells. Regulation of autophagy …

[HTML][HTML] Towards visual proteomics at high resolution

FJB Bäuerlein, W Baumeister - Journal of Molecular Biology, 2021 - Elsevier
Traditionally, structural biologists approach the complexity of cellular proteomes in a
reductionist manner. Proteomes are fractionated, their molecular components purified and …

[HTML][HTML] Biomolecular condensates at sites of DNA damage: more than just a phase

V Spegg, M Altmeyer - DNA repair, 2021 - Elsevier
Protein recruitment to DNA break sites is an integral part of the DNA damage response
(DDR). Elucidation of the hierarchy and temporal order with which DNA damage sensors as …

[HTML][HTML] Phase separation in biology and disease; current perspectives and open questions

S Boeynaems, S Chong, J Gsponer, L Holt… - Journal of molecular …, 2023 - Elsevier
In the past almost 15 years, we witnessed the birth of a new scientific field focused on the
existence, formation, biological functions, and disease associations of membraneless …

Autophagy preferentially degrades non-fibrillar polyQ aggregates

DY Zhao, FJB Bäuerlein, I Saha, FU Hartl… - Molecular Cell, 2024 - cell.com
Aggregation of proteins containing expanded polyglutamine (polyQ) repeats is the
cytopathologic hallmark of a group of dominantly inherited neurodegenerative diseases …