Machine learning-enabled retrobiosynthesis of molecules

T Yu, AG Boob, MJ Volk, X Liu, H Cui, H Zhao - Nature Catalysis, 2023 - nature.com
Retrobiosynthesis provides an effective and sustainable approach to producing functional
molecules. The past few decades have witnessed a rapid expansion of biosynthetic …

Artificial intelligence in the prediction of protein–ligand interactions: recent advances and future directions

A Dhakal, C McKay, JJ Tanner… - Briefings in …, 2022 - academic.oup.com
New drug production, from target identification to marketing approval, takes over 12 years
and can cost around $2.6 billion. Furthermore, the COVID-19 pandemic has unveiled the …

Strategies of Artificial intelligence tools in the domain of nanomedicine

M Habeeb, HW You, M Umapathi, KK Ravikumar… - Journal of Drug Delivery …, 2024 - Elsevier
Nanomedicine is a field of medicine that uses nanotechnology to develop new diagnostic
tools and therapies for a wide range of medical conditions. It encompasses a variety of …

Structure‐Based Drug Discovery with Deep Learning

R Özçelik, D van Tilborg, J Jiménez‐Luna… - …, 2023 - Wiley Online Library
Artificial intelligence (AI) in the form of deep learning has promise for drug discovery and
chemical biology, for example, to predict protein structure and molecular bioactivity, plan …

Open-source machine learning in computational chemistry

A Hagg, KN Kirschner - Journal of Chemical Information and …, 2023 - ACS Publications
The field of computational chemistry has seen a significant increase in the integration of
machine learning concepts and algorithms. In this Perspective, we surveyed 179 open …

In silico methods for identification of potential active sites of therapeutic targets

J Liao, Q Wang, F Wu, Z Huang - Molecules, 2022 - mdpi.com
Target identification is an important step in drug discovery, and computer-aided drug target
identification methods are attracting more attention compared with traditional drug target …

3DLigandSite: structure-based prediction of protein–ligand binding sites

JE McGreig, H Uri, M Antczak… - Nucleic acids …, 2022 - academic.oup.com
Abstract 3DLigandSite is a web tool for the prediction of ligand-binding sites in proteins.
Here, we report a significant update since the first release of 3DLigandSite in 2010. The …

Integrating Artificial Intelligence for Drug Discovery in the Context of Revolutionizing Drug Delivery

AI Visan, I Negut - Life, 2024 - mdpi.com
Drug development is expensive, time-consuming, and has a high failure rate. In recent
years, artificial intelligence (AI) has emerged as a transformative tool in drug discovery …

A systematic survey in geometric deep learning for structure-based drug design

Z Zhang, J Yan, Q Liu, E Chen, M Zitnik - arXiv preprint arXiv:2306.11768, 2023 - arxiv.org
Structure-based drug design (SBDD) utilizes the three-dimensional geometry of proteins to
identify potential drug candidates. Traditional methods, grounded in physicochemical …

CSatDTA: prediction of drug–target binding affinity using convolution model with self-attention

A Ghimire, H Tayara, Z Xuan, KT Chong - International journal of …, 2022 - mdpi.com
Drug discovery, which aids to identify potential novel treatments, entails a broad range of
fields of science, including chemistry, pharmacology, and biology. In the early stages of drug …