RNA regulation: a new genetics?
JS Mattick - Nature Reviews Genetics, 2004 - nature.com
Do non-coding RNAs that are derived from the introns and exons of protein-coding and non-
protein-coding genes represent a fundamental advance in the genetic operating system of …
protein-coding genes represent a fundamental advance in the genetic operating system of …
Non-coding RNAs: hope or hype?
A Hüttenhofer, P Schattner, N Polacek - TRENDS in Genetics, 2005 - cell.com
The past four years have seen an explosion in the number of detected RNA transcripts with
no apparent protein-coding potential. This has led to speculation that non-protein-coding …
no apparent protein-coding potential. This has led to speculation that non-protein-coding …
Comparative genomics reveals 104 candidate structured RNAs from bacteria, archaea, and their metagenomes
Z Weinberg, JX Wang, J Bogue, J Yang, K Corbino… - Genome biology, 2010 - Springer
Abstract Background Structured noncoding RNAs perform many functions that are essential
for protein synthesis, RNA processing, and gene regulation. Structured RNAs can be …
for protein synthesis, RNA processing, and gene regulation. Structured RNAs can be …
The genome of Nanoarchaeum equitans: insights into early archaeal evolution and derived parasitism
The hyperthermophile Nanoarchaeum equitans is an obligate symbiont growing in coculture
with the crenarchaeon Ignicoccus. Ribosomal protein and rRNA-based phylogenies place …
with the crenarchaeon Ignicoccus. Ribosomal protein and rRNA-based phylogenies place …
Partition function and base pairing probabilities of RNA heterodimers
SH Bernhart, H Tafer, U Mückstein, C Flamm… - Algorithms for Molecular …, 2006 - Springer
Background RNA has been recognized as a key player in cellular regulation in recent years.
In many cases, non-coding RNAs exert their function by binding to other nucleic acids, as in …
In many cases, non-coding RNAs exert their function by binding to other nucleic acids, as in …
An abundance of RNA regulators
▪ Abstract The importance of small, noncoding RNAs that act as regulators of transcription, of
RNA modification or stability, and of mRNA translation is becoming increasingly apparent …
RNA modification or stability, and of mRNA translation is becoming increasingly apparent …
A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation
T Geissmann, C Chevalier, MJ Cros… - Nucleic acids …, 2009 - academic.oup.com
Bioinformatic analysis of the intergenic regions of Staphylococcus aureus predicted multiple
regulatory regions. From this analysis, we characterized 11 novel noncoding RNAs (RsaA …
regulatory regions. From this analysis, we characterized 11 novel noncoding RNAs (RsaA …
Aptamer database
JF Lee, JR Hesselberth, LA Meyers… - Nucleic acids …, 2004 - academic.oup.com
The aptamer database is designed to contain comprehensive sequence information on
aptamers and unnatural ribozymes that have been generated by in vitro selection methods …
aptamers and unnatural ribozymes that have been generated by in vitro selection methods …
Prokaryotic silencing (psi) RNAs in Pyrococcus furiosus
In many prokaryotes, noncoding RNAs that arise from the clustered regularly interspaced
short palindromic repeat (CRISPR) loci are now thought to mediate defense against viruses …
short palindromic repeat (CRISPR) loci are now thought to mediate defense against viruses …
A survey of small RNA‐encoding genes in Escherichia coli
Small RNA (sRNA) molecules have gained much interest lately, as recent genome‐wide
studies have shown that they are widespread in a variety of organisms. The relatively small …
studies have shown that they are widespread in a variety of organisms. The relatively small …