Interferon target-gene expression and epigenomic signatures in health and disease

FJ Barrat, MK Crow, LB Ivashkiv - Nature immunology, 2019 - nature.com
Multiple type I interferons and interferon-γ (IFN-γ) are expressed under physiological
conditions and are increased by stress and infections, and in autoinflammatory and …

Digital health technologies: opportunities and challenges in rheumatology

DH Solomon, RS Rudin - Nature Reviews Rheumatology, 2020 - nature.com
The past decade in rheumatology has seen tremendous innovation in digital health
technologies, including the electronic health record, virtual visits, mobile health, wearable …

Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry

F Zhang, K Wei, K Slowikowski, CY Fonseka… - Nature …, 2019 - nature.com
To define the cell populations that drive joint inflammation in rheumatoid arthritis (RA), we
applied single-cell RNA sequencing (scRNA-seq), mass cytometry, bulk RNA sequencing …

Molecular portraits of early rheumatoid arthritis identify clinical and treatment response phenotypes

MJ Lewis, MR Barnes, K Blighe, K Goldmann, S Rana… - Cell reports, 2019 - cell.com
There is a current imperative to unravel the hierarchy of molecular pathways that drive the
transition of early to established disease in rheumatoid arthritis (RA). Herein, we report a …

Machine learning techniques for personalised medicine approaches in immune-mediated chronic inflammatory diseases: applications and challenges

J Peng, EC Jury, P Dönnes, C Ciurtin - Frontiers in pharmacology, 2021 - frontiersin.org
In the past decade, the emergence of machine learning (ML) applications has led to
significant advances towards implementation of personalised medicine approaches for …

Synovial cellular and molecular signatures stratify clinical response to csDMARD therapy and predict radiographic progression in early rheumatoid arthritis patients

F Humby, M Lewis, N Ramamoorthi… - Annals of the …, 2019 - ard.bmj.com
Objectives To unravel the hierarchy of cellular/molecular pathways in the disease tissue of
early, treatment-naïve rheumatoid arthritis (RA) patients and determine their relationship …

A systematic review of the applications of artificial intelligence and machine learning in autoimmune diseases

IS Stafford, M Kellermann, E Mossotto, RM Beattie… - NPJ digital …, 2020 - nature.com
Autoimmune diseases are chronic, multifactorial conditions. Through machine learning (ML),
a branch of the wider field of artificial intelligence, it is possible to extract patterns within …

The transcription factor RFX5 coordinates antigen-presenting function and resistance to nutrient stress in synovial macrophages

Z Hu, TV Zhao, T Huang, S Ohtsuki, K Jin… - Nature …, 2022 - nature.com
Tissue macrophages (Mϕ) are essential effector cells in rheumatoid arthritis (RA),
contributing to autoimmune tissue inflammation through diverse effector functions. Their …

Novel insights into macrophage diversity in rheumatoid arthritis synovium

MA Boutet, G Courties, A Nerviani, B Le Goff… - Autoimmunity …, 2021 - Elsevier
Rheumatoid arthritis (RA) is a chronic inflammatory autoimmune disease affecting joints and
causing progressive damage and disability. Macrophages are of critical importance in the …

The promise of precision medicine in rheumatology

JM Guthridge, CA Wagner, JA James - Nature medicine, 2022 - nature.com
Systemic autoimmune rheumatic diseases (SARDs) exhibit extensive heterogeneity in
clinical presentation, disease course, and treatment response. Therefore, precision …