Imaging-based screens of pool-synthesized cell libraries

M Lawson, J Elf - Nature Methods, 2021 - nature.com
Mapping a genetic perturbation to a change in phenotype is at the core of biological
research. Advances in microscopy have transformed these studies, but they have largely …

High‐throughput, microscope‐based sorting to dissect cellular heterogeneity

N Hasle, A Cooke, S Srivatsan, H Huang… - Molecular Systems …, 2020 - embopress.org
Microscopy is a powerful tool for characterizing complex cellular phenotypes, but linking
these phenotypes to genotype or RNA expression at scale remains challenging. Here, we …

Versatile phenotype-activated cell sorting

J Lee, Z Liu, PH Suzuki, JF Ahrens, S Lai, X Lu… - Science …, 2020 - science.org
Unraveling the genetic and epigenetic determinants of phenotypes is critical for
understanding and re-engineering biology and would benefit from improved methods to …

Human iPSC-derived neurons and lymphoblastoid cells for personalized medicine research in neuropsychiatric disorders

D Gurwitz - Dialogues in clinical neuroscience, 2016 - Taylor & Francis
The development and clinical implementation of personalized medicine crucially depends
on the availability of high-quality human biosamples; animal models, although capable of …

Machine learning predictions of T cell antigen specificity from intracellular calcium dynamics

S This, S Costantino, HJ Melichar - Science Advances, 2024 - science.org
Adoptive T cell therapies rely on the production of T cells with an antigen receptor that
directs their specificity toward tumor-specific antigens. Methods for identifying relevant T cell …

Migration speed of captured breast cancer subpopulations correlates with metastatic fitness

N Desjardins-Lecavalier, MG Annis… - Journal of Cell …, 2023 - journals.biologists.com
The genetic alterations contributing to migration proficiency, a phenotypic hallmark of
metastatic cells required for colonizing distant organs, remain poorly defined. Here, we used …

Optical Cell Tagging for Spatially Resolved Single‐Cell RNA Sequencing

Q Tang, L Liu, Y Guo, X Zhang, S Zhang… - Angewandte …, 2022 - Wiley Online Library
Single‐cell RNA sequencing (scRNA‐seq) has emerged as a powerful tool for profiling gene
expression of distinct cell populations at the single‐cell level. However, the information of …

Transcriptome profiling of mouse brains with qkI-deficient oligodendrocytes reveals major alternative splicing defects including self-splicing

L Darbelli, K Choquet, S Richard, CL Kleinman - Scientific Reports, 2017 - nature.com
The qkI gene encodes a family of RNA binding proteins alternatively spliced at its 3′ end,
giving rise to three major spliced isoforms: QKI-5, QKI-6 and QKI-7. Their expression is …

Advances in Single-Cell Techniques for Linking Phenotypes to Genotypes

HC Chen, Y Ma, J Cheng… - Cancer heterogeneity and …, 2024 - pmc.ncbi.nlm.nih.gov
Single-cell analysis has become an essential tool in modern biological research, providing
unprecedented insights into cellular behavior and heterogeneity. By examining individual …

A potent nuclear export mechanism imposes USP16 cytoplasmic localization during interphase

N Sen Nkwe, S Daou, M Uriarte… - Journal of cell …, 2020 - journals.biologists.com
ABSTRACT USP16 (also known as UBP-M) has emerged as a histone H2AK119
deubiquitylase (DUB) implicated in the regulation of chromatin-associated processes and …