Evaluation of methods for the prediction of membrane spanning regions

S Möller, MDR Croning, R Apweiler - Bioinformatics, 2001 - academic.oup.com
Motivation: A variety of tools are available to predict the topology of transmembrane proteins.
To date no independent evaluation of the performance of these tools has been published. A …

Basic charge clusters and predictions of membrane protein topology

D Juretić, L Zoranić, D Zucić - Journal of chemical information and …, 2002 - ACS Publications
The topology predictor SPLIT 4.0 (http://pref. etfos. hr) predicts the sequence location of
transmembrane helices by performing an automatic selection of optimal amino acid attribute …

Knowledge-based computational methods for identifying or designing novel, non-homologous antimicrobial peptides

D Juretić, D Vukičević, D Petrov, M Novković… - European biophysics …, 2011 - Springer
We describe computational approaches for identifying promising lead candidates for the
development of peptide antibiotics, in the context of quantitative structure–activity …

Hydrophobic interactions drive ligand-receptor recognition for activation and inhibition of staphylococcal quorum sensing

JS Wright III, GJ Lyon, EA George… - Proceedings of the …, 2004 - National Acad Sciences
Two-component systems represent the most widely used signaling paradigm in living
organisms. Encoding the prototypical two-component system in Gram-positive bacteria, the …

[HTML][HTML] Computational approaches for revealing the structure of membrane transporters: case study on bilitranslocase

K Venko, AR Choudhury, M Novič - Computational and structural …, 2017 - Elsevier
The structural and functional details of transmembrane proteins are vastly underexplored,
mostly due to experimental difficulties regarding their solubility and stability. Currently, the …

[HTML][HTML] Homology modeling of human CCR5 and analysis of its binding properties through molecular docking and molecular dynamics simulation

M Shahlaei, A Madadkar-Sobhani, K Mahnam… - … et Biophysica Acta (BBA …, 2011 - Elsevier
In this study, homology modeling, molecular docking and molecular dynamics simulation
were performed to explore structural features and binding mechanism of some inhibitors of …

Mutation in mitochondrial complex I ND6 subunit is associated with defective response to hypoxia in human glioma cells

C DeHaan, B Habibi-Nazhad, E Yan, N Salloum… - Molecular Cancer, 2004 - Springer
Background Hypoxia-tolerant human glioma cells reduce oxygen consumption rate in
response to oxygen deficit, a defense mechanism that contributes to survival under …

[图书][B] Bioenergetics: a bridge across life and universe

D Juretic - 2021 - taylorfrancis.com
Bioenergetics deals with the very first energy transformation steps performed by living cells.
Increased dissipation is the primary effect of processing external energy packages. Enzyme …

[HTML][HTML] Designed peptide with a flexible central motif from ranatuerins adapts its conformation to bacterial membranes

D Juretić, Y Sonavane, N Ilić, G Gajski… - … et Biophysica Acta (BBA …, 2018 - Elsevier
The long-standing goal in the field of peptide antibiotics has been to design lead
compounds that have a wide spectrum of excellent antibacterial activity but are nontoxic to …

Comparative genomics of serotype Asia 1 foot-and-mouth disease virus isolates from India sampled over the last two decades

JK Mohapatra, A Sanyal, D Hemadri, C Tosh, S Biswas… - Virus research, 2008 - Elsevier
This study deals with a comparative analysis of complete genome sequences of twenty-one
serotype Asia 1 foot-and-mouth disease (FMD) field viruses isolated over a period of two …