Photodissociation mass spectrometry: new tools for characterization of biological molecules

JS Brodbelt - Chemical Society Reviews, 2014 - pubs.rsc.org
Photodissociation mass spectrometry combines the ability to activate and fragment ions
using photons with the sensitive detection of the resulting product ions by mass …

Protein amino-termini and how to identify them

A Bogaert, K Gevaert - Expert Review of Proteomics, 2020 - Taylor & Francis
Introduction The N-terminus of a protein can encode several protein features, including its
half-live and its localization. As the proteomics field remains dominated by bottom-up …

Charge transfer dissociation (CTD) mass spectrometry of peptide cations using kiloelectronvolt helium cations

WD Hoffmann, GP Jackson - Journal of the American Society for …, 2014 - ACS Publications
A kiloelectronvolt beam of helium ions is used to ionize and fragment precursor peptide ions
starting in the 1+ charge state. The electron affinity of helium cations (24.6 eV) exceeds the …

Distinguishing aspartic and isoaspartic acids in peptides by several mass spectrometric fragmentation methods

N DeGraan-Weber, J Zhang… - Journal of The American …, 2016 - ACS Publications
Six ion fragmentation techniques that can distinguish aspartic acid from its isomer,
isoaspartic acid, were compared. MALDI post-source decay (PSD), MALDI 157 nm …

An improved stable isotope N-terminal labeling approach with light/heavy TMPP to automate proteogenomics data validation: dN-TOP

D Bertaccini, S Vaca, C Carapito… - Journal of proteome …, 2013 - ACS Publications
In silico gene prediction has proven to be prone to errors, especially regarding precise
localization of start codons that spread in subsequent biological studies. Therefore, the high …

Diagnostic utility of N-terminal TMPP labels for unambiguous identification of clipped sites in therapeutic proteins

HP Gunawardena, MM Jayatilake, JD Brelsford… - Scientific Reports, 2023 - nature.com
Protein therapeutics are susceptible to clipping via enzymatic and nonenzymatic
mechanisms that create neo-N-termini. Typically, neo-N-termini are identified by chemical …

Ultraviolet photodissociation of protonated, fixed charge, and charge-reduced peptides

DD Holden, JM Pruet, JS Brodbelt - International Journal of Mass …, 2015 - Elsevier
The fragmentation behavior of three peptides (RGAFSTFGAS, GAFSTFGASR, and
GAFSTFGASS) was evaluated by collisional activated dissociation (CAD), higher energy …

Ultraviolet photodissociation induced by light‐emitting diodes in a planar ion trap

DD Holden, A Makarov, JC Schwartz… - Angewandte …, 2016 - Wiley Online Library
The first application of light‐emitting diodes (LEDs) for ultraviolet photodissociation (UVPD)
mass spectrometry is reported. LEDs provide a compact, low cost light source and have …

A novel triethylphosphonium charge tag on peptides: synthesis, derivatization, and fragmentation

N DeGraan-Weber, SA Ward… - Journal of The American …, 2017 - ACS Publications
Charge tagging is a peptide derivatization process that commonly localizes a positive
charge on the N-terminus. Upon low energy activation (eg, collision-induced dissociation or …

Identification of N‐terminal protein processing sites by chemical labeling mass spectrometry

SA Misal, S Li, H Tang, P Radivojac… - … in Mass Spectrometry, 2019 - Wiley Online Library
Rationale Proteins undergo post‐translational modifications and proteolytic processing that
can affect their biological function. Processing often involves the loss of single residues …