Assessing genomic diversity and signatures of selection in Jiaxian Red cattle using whole-genome sequencing data

X Xia, S Zhang, H Zhang, Z Zhang, N Chen, Z Li, H Sun… - BMC genomics, 2021 - Springer
Background Native cattle breeds are an important source of genetic variation because they
might carry alleles that enable them to adapt to local environment and tough feeding …

Dual domestications and origin of traits in grapevine evolution

Y Dong, S Duan, Q Xia, Z Liang, X Dong, K Margaryan… - Science, 2023 - science.org
We elucidate grapevine evolution and domestication histories with 3525 cultivated and wild
accessions worldwide. In the Pleistocene, harsh climate drove the separation of wild grape …

A super pan-genomic landscape of rice

L Shang, X Li, H He, Q Yuan, Y Song, Z Wei, H Lin… - Cell Research, 2022 - nature.com
Pan-genomes from large natural populations can capture genetic diversity and reveal
genomic complexity. Using de novo long-read assembly, we generated a graph-based …

Improved pea reference genome and pan-genome highlight genomic features and evolutionary characteristics

T Yang, R Liu, Y Luo, S Hu, D Wang, C Wang… - Nature …, 2022 - nature.com
Complete and accurate reference genomes and annotations provide fundamental resources
for functional genomics and crop breeding. Here we report a de novo assembly and …

A chickpea genetic variation map based on the sequencing of 3,366 genomes

RK Varshney, M Roorkiwal, S Sun, P Bajaj… - Nature, 2021 - nature.com
Zero hunger and good health could be realized by 2030 through effective conservation,
characterization and utilization of germplasm resources. So far, few chickpea (Cicer …

Population genomic analysis of Aegilops tauschii identifies targets for bread wheat improvement

K Gaurav, S Arora, P Silva, J Sánchez-Martín… - Nature …, 2022 - nature.com
Aegilops tauschii, the diploid wild progenitor of the D subgenome of bread wheat, is a
reservoir of genetic diversity for improving bread wheat performance and environmental …

Two divergent haplotypes from a highly heterozygous lychee genome suggest independent domestication events for early and late-maturing cultivars

G Hu, J Feng, X Xiang, J Wang, J Salojärvi, C Liu… - Nature …, 2022 - nature.com
Lychee is an exotic tropical fruit with a distinct flavor. The genome of cultivar 'Feizixiao'was
assembled into 15 pseudochromosomes, totaling~ 470 Mb. High heterozygosity (2.27%) …

Large-scale whole-genome resequencing unravels the domestication history of Cannabis sativa

G Ren, X Zhang, Y Li, K Ridout… - Science …, 2021 - science.org
Cannabis sativa has long been an important source of fiber extracted from hemp and both
medicinal and recreational drugs based on cannabinoid compounds. Here, we investigated …

Pangenome analysis reveals genomic variations associated with domestication traits in broomcorn millet

J Chen, Y Liu, M Liu, W Guo, Y Wang, Q He, W Chen… - Nature Genetics, 2023 - nature.com
Broomcorn millet (Panicum miliaceum L.) is an orphan crop with the potential to improve
cereal production and quality, and ensure food security. Here we present the genetic …

Multiple domestications of Asian rice

CY Jing, FM Zhang, XH Wang, MX Wang, L Zhou, Z Cai… - Nature plants, 2023 - nature.com
The origin of domesticated Asian rice (Oryza sativa L.) has been controversial for more than
half a century. The debates have focused on two leading hypotheses: a single domestication …