Biological soft matter: intrinsically disordered proteins in liquid–liquid phase separation and biomolecular condensates
AV Fonin, IA Antifeeva, IM Kuznetsova… - Essays in …, 2022 - portlandpress.com
The facts that many proteins with crucial biological functions do not have unique structures
and that many biological processes are compartmentalized into the liquid-like biomolecular …
and that many biological processes are compartmentalized into the liquid-like biomolecular …
Evolution of short linear motifs and disordered proteins Topic: yeast as model system to study evolution
Evolutionary preservation of protein structure had a major influence on the field of molecular
evolution: changes in individual amino acids that did not disrupt protein folding would either …
evolution: changes in individual amino acids that did not disrupt protein folding would either …
Proteome-wide signatures of function in highly diverged intrinsically disordered regions
Intrinsically disordered regions make up a large part of the proteome, but the sequence-to-
function relationship in these regions is poorly understood, in part because the primary …
function relationship in these regions is poorly understood, in part because the primary …
Intrinsic disorder in human RNA-binding proteins
Although RNA-binding proteins (RBPs) are known to be enriched in intrinsic disorder, no
previous analysis focused on RBPs interacting with specific RNA types. We fill this gap with …
previous analysis focused on RBPs interacting with specific RNA types. We fill this gap with …
Strong evidence for the adaptive walk model of gene evolution in Drosophila and Arabidopsis
Understanding the dynamics of species adaptation to their environments has long been a
central focus of the study of evolution. Theories of adaptation propose that populations …
central focus of the study of evolution. Theories of adaptation propose that populations …
Characterization of intrinsically disordered regions in proteins informed by human genetic diversity
All proteomes contain both proteins and polypeptide segments that don't form a defined
three-dimensional structure yet are biologically active—called intrinsically disordered …
three-dimensional structure yet are biologically active—called intrinsically disordered …
Evolution of virus-like features and intrinsically disordered regions in retrotransposon-derived mammalian genes
R Cagliani, D Forni, A Mozzi, R Fuchs… - Molecular Biology …, 2024 - academic.oup.com
Several mammalian genes have originated from the domestication of retrotransposons,
selfish mobile elements related to retroviruses. Some of the proteins encoded by these …
selfish mobile elements related to retroviruses. Some of the proteins encoded by these …
Mediator subunit Med15 dictates the conserved “fuzzy” binding mechanism of yeast transcription activators Gal4 and Gcn4
LM Tuttle, D Pacheco, L Warfield, DB Wilburn… - Nature …, 2021 - nature.com
The acidic activation domain (AD) of yeast transcription factor Gal4 plays a dual role in
transcription repression and activation through binding to Gal80 repressor and Mediator …
transcription repression and activation through binding to Gal80 repressor and Mediator …
[HTML][HTML] Evolution of the orthopoxvirus core genome
Orthopoxviruses comprise several relevant pathogens, including the causative agent of
smallpox and monkeypox virus. Analysis of orthopoxvirus genome evolution mainly focused …
smallpox and monkeypox virus. Analysis of orthopoxvirus genome evolution mainly focused …
Evolution of weak cooperative interactions for biological specificity
A Gao, K Shrinivas, P Lepeudry… - Proceedings of the …, 2018 - National Acad Sciences
A hallmark of biological systems is that particular functions and outcomes are realized in
specific contexts, such as when particular signals are received. One mechanism for …
specific contexts, such as when particular signals are received. One mechanism for …