siRNA versus miRNA as therapeutics for gene silencing

JKW Lam, MYT Chow, Y Zhang, SWS Leung - Molecular Therapy-Nucleic …, 2015 - cell.com
Discovered a little over two decades ago, small interfering RNAs (siRNAs) and microRNAs
(miRNAs) are noncoding RNAs with important roles in gene regulation. They have recently …

Microscopy-based high-content screening

M Boutros, F Heigwer, C Laufer - Cell, 2015 - cell.com
Image-based screening is used to measure a variety of phenotypes in cells and whole
organisms. Combined with perturbations such as RNA interference, small molecules, and …

Recognizing and avoiding siRNA off-target effects for target identification and therapeutic application

AL Jackson, PS Linsley - Nature reviews Drug discovery, 2010 - nature.com
Small interfering RNAs (siRNAs) are widely used to study gene function owing to the ease
with which they silence target genes, and there is considerable interest in their potential for …

Platforms for investigating LncRNA functions

JL Charles Richard… - … : Translating Life Sciences …, 2018 - journals.sagepub.com
Prior to the sequencing of the human genome, it was presumed that most of the DNA coded
for proteins. However, with the advent of next-generation sequencing, it has now been …

Systems survey of endocytosis by multiparametric image analysis

C Collinet, M Stöter, CR Bradshaw, N Samusik… - Nature, 2010 - nature.com
Endocytosis is a complex process fulfilling many cellular and developmental functions.
Understanding how it is regulated and integrated with other cellular processes requires a …

Resolution of R-loops by INO80 promotes DNA replication and maintains cancer cell proliferation and viability

L Prendergast, UL McClurg, R Hristova… - Nature …, 2020 - nature.com
Collisions between the DNA replication machinery and co-transcriptional R-loops can
impede DNA synthesis and are a major source of genomic instability in cancer cells. How …

Target mRNA abundance dilutes microRNA and siRNA activity

A Arvey, E Larsson, C Sander, CS Leslie… - Molecular systems …, 2010 - embopress.org
Post‐transcriptional regulation by microRNAs and siRNAs depends not only on
characteristics of individual binding sites in target mRNA molecules, but also on system …

An RNAi screen of chromatin proteins identifies Tip60-p400 as a regulator of embryonic stem cell identity

TG Fazzio, JT Huff, B Panning - Cell, 2008 - cell.com
Proper regulation of chromatin structure is necessary for the maintenance of cell type-
specific gene expression patterns. The embryonic stem cell (ESC) expression pattern …

siPools: highly complex but accurately defined siRNA pools eliminate off-target effects

M Hannus, M Beitzinger, JC Engelmann… - Nucleic acids …, 2014 - academic.oup.com
Short interfering RNAs (siRNAs) are widely used as tool for gene inactivation in basic
research and therapeutic applications. One of the major shortcomings of siRNA experiments …

The Prp19 complex and the Usp4Sart3 deubiquitinating enzyme control reversible ubiquitination at the spliceosome

EJ Song, SL Werner, J Neubauer… - Genes & …, 2010 - genesdev.cshlp.org
The spliceosome, a dynamic assembly of proteins and RNAs, catalyzes the excision of
intron sequences from nascent mRNAs. Recent work has suggested that the activity and …