A comparative review of dimension reduction methods in approximate Bayesian computation

MGB Blum, MA Nunes, D Prangle, SA Sisson - 2013 - projecteuclid.org
Supplement to “A Comparative Review of Dimension Reduction Methods in Approximate
Bayesian Computation”. The supplement contains for each of the three examples a …

Model selection in systems and synthetic biology

P Kirk, T Thorne, MPH Stumpf - Current opinion in biotechnology, 2013 - Elsevier
Developing mechanistic models has become an integral aspect of systems biology, as has
the need to differentiate between alternative models. Parameterizing mathematical models …

Reliable ABC model choice via random forests

P Pudlo, JM Marin, A Estoup, JM Cornuet… - …, 2016 - academic.oup.com
Abstract Motivation: Approximate Bayesian computation (ABC) methods provide an
elaborate approach to Bayesian inference on complex models, including model choice. Both …

Constructing summary statistics for approximate Bayesian computation: semi-automatic approximate Bayesian computation

P Fearnhead, D Prangle - … of the Royal Statistical Society Series …, 2012 - academic.oup.com
Many modern statistical applications involve inference for complex stochastic models, where
it is easy to simulate from the models, but impossible to calculate likelihoods. Approximate …

Quantification of subclonal selection in cancer from bulk sequencing data

MJ Williams, B Werner, T Heide, C Curtis, CP Barnes… - Nature …, 2018 - nature.com
Subclonal architectures are prevalent across cancer types. However, the temporal
evolutionary dynamics that produce tumor subclones remain unknown. Here we measure …

A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation

J Liepe, P Kirk, S Filippi, T Toni, CP Barnes… - Nature protocols, 2014 - nature.com
As modeling becomes a more widespread practice in the life sciences and biomedical
sciences, researchers need reliable tools to calibrate models against ever more complex …

Approximate Bayesian computation (ABC) gives exact results under the assumption of model error

RD Wilkinson - Statistical applications in genetics and molecular …, 2013 - degruyter.com
Approximate Bayesian computation (ABC) or likelihood-free inference algorithms are used
to find approximations to posterior distributions without making explicit use of the likelihood …

[HTML][HTML] Approximate Bayesian Computation for infectious disease modelling

A Minter, R Retkute - Epidemics, 2019 - Elsevier
Abstract Approximate Bayesian Computation (ABC) techniques are a suite of model fitting
methods which can be implemented without a using likelihood function. In order to use ABC …

On optimality of kernels for approximate Bayesian computation using sequential Monte Carlo

S Filippi, CP Barnes, J Cornebise… - Statistical applications in …, 2013 - degruyter.com
Approximate Bayesian computation (ABC) has gained popularity over the past few years for
the analysis of complex models arising in population genetics, epidemiology and system …

Neural Methods for Amortized Inference

A Zammit-Mangion, M Sainsbury-Dale… - Annual Review of …, 2024 - annualreviews.org
Simulation-based methods for statistical inference have evolved dramatically over the past
50 years, keeping pace with technological advancements. The field is undergoing a new …