Machine learning approaches in microbiome research: challenges and best practices

G Papoutsoglou, S Tarazona, MB Lopes… - Frontiers in …, 2023 - frontiersin.org
Microbiome data predictive analysis within a machine learning (ML) workflow presents
numerous domain-specific challenges involving preprocessing, feature selection, predictive …

Predicting drug-microbiome interactions with machine learning

LE McCoubrey, S Gaisford, M Orlu, AW Basit - Biotechnology advances, 2022 - Elsevier
Pivotal work in recent years has cast light on the importance of the human microbiome in
maintenance of health and physiological response to drugs. It is now clear that …

Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity

JP Shaffer, LF Nothias, LR Thompson, JG Sanders… - Nature …, 2022 - nature.com
Despite advances in sequencing, lack of standardization makes comparisons across studies
challenging and hampers insights into the structure and function of microbial communities …

Explainable AI for glaucoma prediction analysis to understand risk factors in treatment planning

MS Kamal, N Dey, L Chowdhury… - IEEE Transactions …, 2022 - ieeexplore.ieee.org
Glaucoma causes irreversible blindness. In 2020, about 80 million people worldwide had
glaucoma. Existing machine learning (ML) models are limited to glaucoma prediction, where …

Evolving approaches to profiling the microbiome in skin disease

Y Chen, R Knight, RL Gallo - Frontiers in Immunology, 2023 - frontiersin.org
Despite its harsh and dry environment, human skin is home to diverse microbes, including
bacteria, fungi, viruses, and microscopic mites. These microbes form communities that may …

Advancing microbiome research with machine learning: key findings from the ML4Microbiome COST action

D D'Elia, J Truu, L Lahti, M Berland… - Frontiers in …, 2023 - frontiersin.org
The rapid development of machine learning (ML) techniques has opened up the data-dense
field of microbiome research for novel therapeutic, diagnostic, and prognostic applications …

A hybrid forecasting approach for China's national carbon emission allowance prices with balanced accuracy and interpretability

Y Mao, X Yu - Journal of Environmental Management, 2024 - Elsevier
A significant milestone in China's carbon market was reached with the official launch and
operation of the National Carbon Emission Trading Market. The accurate prediction of the …

eXplainable Artificial Intelligence (XAI) in aging clock models

A Kalyakulina, I Yusipov, A Moskalev… - Ageing Research …, 2024 - Elsevier
XAI is a rapidly progressing field of machine learning, aiming to unravel the predictions of
complex models. XAI is especially required in sensitive applications, eg in health care, when …

Interpretable machine learning for genomics

DS Watson - Human genetics, 2022 - Springer
High-throughput technologies such as next-generation sequencing allow biologists to
observe cell function with unprecedented resolution, but the resulting datasets are too large …

Bioprospecting the skin microbiome: advances in therapeutics and personal care products

K Nicholas-Haizelden, B Murphy, M Hoptroff… - Microorganisms, 2023 - mdpi.com
Bioprospecting is the discovery and exploration of biological diversity found within
organisms, genetic elements or produced compounds with prospective commercial or …