[HTML][HTML] A comprehensive survey of the mutagenic impact of common cancer cytotoxics

B Szikriszt, Á Póti, O Pipek, M Krzystanek, N Kanu… - Genome biology, 2016 - Springer
Background Genomic mutations caused by cytotoxic agents used in cancer chemotherapy
may cause secondary malignancies as well as contribute to the evolution of treatment …

Emerging systems biology approaches in nanotoxicology: Towards a mechanism-based understanding of nanomaterial hazard and risk

PM Costa, B Fadeel - Toxicology and applied pharmacology, 2016 - Elsevier
Engineered nanomaterials are being developed for a variety of technological applications.
However, the increasing use of nanomaterials in society has led to concerns about their …

Genome-scale mutational signatures of aflatoxin in cells, mice, and human tumors

MN Huang, W Yu, WW Teoh, M Ardin… - Genome …, 2017 - genome.cshlp.org
Aflatoxin B1 (AFB1) is a mutagen and IARC (International Agency for Research on Cancer)
Group 1 carcinogen that causes hepatocellular carcinoma (HCC). Here, we present the first …

A workflow to study mechanistic indicators for driver gene prediction with Moonlight

M Nourbakhsh, A Saksager, N Tom… - Briefings in …, 2023 - academic.oup.com
Prediction of driver genes (tumor suppressors and oncogenes) is an essential step in
understanding cancer development and discovering potential novel treatments. We recently …

[HTML][HTML] Base changes in tumour DNA have the power to reveal the causes and evolution of cancer

M Hollstein, LB Alexandrov, CP Wild, M Ardin, J Zavadil - Oncogene, 2017 - nature.com
Next-generation sequencing (NGS) technology has demonstrated that the cancer genomes
are peppered with mutations. Although most somatic tumour mutations are unlikely to have …

Quantification and mapping of alkylation in the human genome reveal single nucleotide resolution precursors of mutational signatures

Y Jiang, C Mingard, SM Huber, V Takhaveev… - ACS Central …, 2023 - ACS Publications
Chemical modifications to DNA bases, including DNA adducts arising from reactions with
electrophilic chemicals, are well-known to impact cell growth, miscode during replication …

Environmental epitranscriptomics

A Cayir, HM Byun, TM Barrow - Environmental Research, 2020 - Elsevier
Chemical modifications of RNA molecules have gained increasing attention since evidence
emerged for their substantive roles in a range of biological processes, such as the stability …

Immortalization of normal human mammary epithelial cells in two steps by direct targeting of senescence barriers does not require gross genomic alterations

JC Garbe, L Vrba, K Sputova, L Fuchs, P Novak… - Cell cycle, 2014 - Taylor & Francis
Telomerase reactivation and immortalization are critical for human carcinoma progression.
However, little is known about the mechanisms controlling this crucial step, due in part to the …

[HTML][HTML] TAF1, associated with intellectual disability in humans, is essential for embryogenesis and regulates neurodevelopmental processes in zebrafish

S Gudmundsson, M Wilbe, B Filipek-Górniok… - Scientific Reports, 2019 - nature.com
The TATA-box binding protein associated factor 1 (TAF1) protein is a key unit of the
transcription factor II D complex that serves a vital function during transcription initiation …

Experimental and pan-cancer genome analyses reveal widespread contribution of acrylamide exposure to carcinogenesis in humans

M Zhivagui, AWT Ng, M Ardin, MI Churchwell… - Genome …, 2019 - genome.cshlp.org
Humans are frequently exposed to acrylamide, a probable human carcinogen found in
commonplace sources such as most heated starchy foods or tobacco smoke. Prior evidence …