Perspectives and benefits of high-throughput long-read sequencing in microbial ecology

L Tedersoo, M Albertsen, S Anslan… - Applied and …, 2021 - Am Soc Microbiol
Short-read, high-throughput sequencing (HTS) methods have yielded numerous important
insights into microbial ecology and function. Yet, in many instances short-read HTS …

Fishing for fish environmental DNA: Ecological applications, methodological considerations, surveying designs, and ways forward

M Yao, S Zhang, Q Lu, X Chen, SY Zhang… - Molecular …, 2022 - Wiley Online Library
Vast global declines of freshwater and marine fish diversity and population abundance pose
serious threats to both ecosystem sustainability and human livelihoods. Environmental DNA …

MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics

R Allio, A Schomaker‐Bastos… - Molecular ecology …, 2020 - Wiley Online Library
Thanks to the development of high‐throughput sequencing technologies, target enrichment
sequencing of nuclear ultraconserved DNA elements (UCEs) now allows routine inference …

Large-scale generation and analysis of filamentous fungal DNA barcodes boosts coverage for kingdom fungi and reveals thresholds for fungal species and higher …

D Vu, M Groenewald, M De Vries… - Studies in …, 2019 - ingentaconnect.com
Species identification lies at the heart of biodiversity studies that has in recent years
favoured DNA-based approaches. Microbial Biological Resource Centres are a rich source …

[图书][B] Environmental DNA: For biodiversity research and monitoring

P Taberlet, A Bonin, L Zinger, E Coissac - 2018 - books.google.com
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …

Non‐specific amplification compromises environmental DNA metabarcoding with COI

RA Collins, J Bakker, OS Wangensteen… - Methods in Ecology …, 2019 - Wiley Online Library
Metabarcoding extra‐organismal DNA from environmental samples is now a key technique
in aquatic biomonitoring and ecosystem health assessment. Of critical consideration when …

A review of the trade in orchids and its implications for conservation

A Hinsley, HJ De Boer, MF Fay, SW Gale… - Botanical Journal of …, 2018 - academic.oup.com
Orchids are one of the largest plant families and are commercially traded for a variety of
purposes, including as ornamental plants, medicinal products and food. These markets …

Postglacial viability and colonization in North America's ice-free corridor

MW Pedersen, A Ruter, C Schweger, H Friebe, RA Staff… - Nature, 2016 - nature.com
Abstract During the Last Glacial Maximum, continental ice sheets isolated Beringia
(northeast Siberia and northwest North America) from unglaciated North America. By around …

DNA metabarcoding in diet studies: Unveiling ecological aspects in aquatic and terrestrial ecosystems

LL de Sousa, SM Silva, R Xavier - Environmental DNA, 2019 - Wiley Online Library
Effective conservation of species and ecosystems requires the understanding of important
ecological traits, such as dietary habits, food webs, and trophic niches. In diet studies, the …

Plant DNA barcodes: Applications today and in the future

WJ Kress - Journal of systematics and evolution, 2017 - Wiley Online Library
DNA barcodes have provided a new biological tool for organismal biologists to increase
their understanding of the natural world. Over the last decade four plant DNA barcode …