[HTML][HTML] Deciphering the evolution and complexity of wheat germplasm from a genomic perspective

Z Wang, L Miao, Y Chen, H Peng, Z Ni, Q Sun… - Journal of genetics and …, 2023 - Elsevier
Bread wheat provides an essential fraction of the daily calorific intake for humanity. Due to
its huge and complex genome, progress in studying on the wheat genome is substantially …

Studying plant vascular development using single-cell approaches

C von der Mark, M Minne, B De Rybel - Current Opinion in Plant Biology, 2024 - Elsevier
Vascular cells form a highly complex and heterogeneous tissue. Its composition, function,
shape, and arrangement vary with the developmental stage and between organs and …

[PDF][PDF] scPlant: a versatile framework for single-cell transcriptomic data analysis in plants

S Cao, Z He, R Chen, Y Luo, LY Fu, X Zhou, C He… - Plant …, 2023 - cell.com
Single-cell transcriptomics has been fully embraced in plant biological research and is
revolutionizing our understanding of plant growth, development, and responses to external …

Cell type–specific cytonuclear coevolution in three allopolyploid plant species

K Zhang, X Zhao, Y Zhao, Z Zhang… - Proceedings of the …, 2023 - National Acad Sciences
Cytonuclear disruption may accompany allopolyploid evolution as a consequence of the
merger of different nuclear genomes in a cellular environment having only one set of …

Single‐cell transcriptomic analysis of pea shoot development and cell‐type‐specific responses to boron deficiency

X Chen, Y Ru, H Takahashi, M Nakazono… - The Plant …, 2024 - Wiley Online Library
Understanding how nutrient stress impacts plant growth is fundamentally important to the
development of approaches to improve crop production under nutrient limitation. Here we …

Evolution of plant cell-type-specific cis-regulatory elements

H Yan, JP Mendieta, X Zhang, AP Marand, Y Liang… - bioRxiv, 2024 - biorxiv.org
Cis-regulatory elements (CREs) are critical in coordinating the regulation of gene
expression. Understanding how CREs evolve represents a challenging endeavor. Here, we …

[HTML][HTML] Application and prospects of single-cell and spatial omics technologies in woody plants

S Liang, Y Li, Y Chen, H Huang, R Zhou, T Ma - Forestry Research, 2023 - maxapress.com
Over the past decade, high-throughput sequencing and high-resolution single-cell
transcriptome sequencing technologies have undergone rapid development, leading to …

[HTML][HTML] Advances in the application of single-cell transcriptomics in plant systems and synthetic biology

MT Islam, Y Liu, MM Hassan, PE Abraham… - BioDesign …, 2024 - spj.science.org
Plants are complex systems hierarchically organized and composed of various cell types. To
understand the molecular underpinnings of complex plant systems, single-cell RNA …

Genomic asymmetric epigenetic modification of transposable elements is involved in gene expression regulation of allopolyploid Brassica napus

Y Xiao, Z Xi, F Wang, J Wang - The Plant Journal, 2024 - Wiley Online Library
Polyploids are common and have a wide geographical distribution and environmental
adaptability. Allopolyploidy may lead to the activation of transposable elements (TE) …

[HTML][HTML] Single-Cell Transcriptome Atlas of Leaves at Different Developmental Stages in Populus alba × Populus glandulosa Clone 84K

Y Jing, Y Ren, S Zhang, X Kang - Forests, 2024 - mdpi.com
Leaves are crucial photosynthetic plant organs. The development of poplar leaves has
spatio-temporal specificity and it is of great significance to study the single-cell transcription …