The genomes of three uneven siblings: footprints of the lifestyles of three Trichoderma species

M Schmoll, C Dattenböck… - Microbiology and …, 2016 - Am Soc Microbiol
The genus Trichoderma contains fungi with high relevance for humans, with applications in
enzyme production for plant cell wall degradation and use in biocontrol. Here, we provide a …

Sex in fungi

M Ni, M Feretzaki, S Sun, X Wang… - Annual review of …, 2011 - annualreviews.org
Sexual reproduction enables genetic exchange in eukaryotic organisms as diverse as fungi,
animals, plants, and ciliates. Given its ubiquity, sex is thought to have evolved once, possibly …

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

S Gnerre, I MacCallum, D Przybylski… - Proceedings of the …, 2011 - National Acad Sciences
Massively parallel DNA sequencing technologies are revolutionizing genomics by making it
possible to generate billions of relatively short (~ 100-base) sequence reads at very low …

Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel …

P Wiemann, CMK Sieber, KW Von Bargen… - PLoS …, 2013 - journals.plos.org
The fungus Fusarium fujikuroi causes “bakanae” disease of rice due to its ability to produce
gibberellins (GAs), but it is also known for producing harmful mycotoxins. However, the …

Genome Sequencing and Comparative Transcriptomics of the Model Entomopathogenic Fungi Metarhizium anisopliae and M. acridum

Q Gao, K Jin, SH Ying, Y Zhang, G Xiao, Y Shang… - PLoS …, 2011 - journals.plos.org
Metarhizium spp. are being used as environmentally friendly alternatives to chemical
insecticides, as model systems for studying insect-fungus interactions, and as a resource of …

Extracellular electron transfer systems fuel cellulose oxidative degradation

D Kracher, S Scheiblbrandner, AKG Felice… - Science, 2016 - science.org
Ninety percent of lignocellulose-degrading fungi contain genes encoding lytic
polysaccharide monooxygenases (LPMOs). These enzymes catalyze the initial oxidative …

A Systematically Improved High Quality Genome and Transcriptome of the Human Blood Fluke Schistosoma mansoni

AV Protasio, IJ Tsai, A Babbage, S Nichol… - PLoS neglected …, 2012 - journals.plos.org
Schistosomiasis is one of the most prevalent parasitic diseases, affecting millions of people
in developing countries. Amongst the human-infective species, Schistosoma mansoni is also …

A Practical Comparison of De Novo Genome Assembly Software Tools for Next-Generation Sequencing Technologies

W Zhang, J Chen, Y Yang, Y Tang, J Shang, B Shen - PloS one, 2011 - journals.plos.org
The advent of next-generation sequencing technologies is accompanied with the
development of many whole-genome sequence assembly methods and software, especially …

Specific adaptation of Ustilaginoidea virens in occupying host florets revealed by comparative and functional genomics

Y Zhang, K Zhang, A Fang, Y Han, J Yang… - Nature …, 2014 - nature.com
Abstract Ustilaginoidea virens (Cooke) Takah is an ascomycetous fungus that causes rice
false smut, a devastating emerging disease worldwide. Here we report a 39.4 Mb draft …

The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also …

PJGM De Wit, A Van Der Burgt, B Ökmen… - PLoS …, 2012 - journals.plos.org
We sequenced and compared the genomes of the Dothideomycete fungal plant pathogens
Cladosporium fulvum (Cfu)(syn. Passalora fulva) and Dothistroma septosporum (Dse) that …