Top down proteomics: facts and perspectives

AD Catherman, OS Skinner, NL Kelleher - Biochemical and biophysical …, 2014 - Elsevier
The rise of the “Top Down” method in the field of mass spectrometry-based proteomics has
ushered in a new age of promise and challenge for the characterization and identification of …

Review on the physics of electrospray: from electrokinetics to the operating conditions of single and coaxial Taylor cone-jets, and AC electrospray

AM Ganán-Calvo, JM López-Herrera… - Journal of Aerosol …, 2018 - Elsevier
In this work, we review the physics of the liquid ejection by the application of electric fields,
paying special attention to the steady cone-jet mode of electrospray. We aim to provide a …

[HTML][HTML] Enhanced respiratory chain supercomplex formation in response to exercise in human skeletal muscle

C Greggio, P Jha, SS Kulkarni, S Lagarrigue… - Cell metabolism, 2017 - cell.com
Mitochondrial dysfunction is a hallmark of multiple metabolic complications. Physical activity
is known to increase mitochondrial content in skeletal muscle, counteracting age-related …

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

KF Ettwig, MK Butler, D Le Paslier, E Pelletier… - Nature, 2010 - nature.com
Only three biological pathways are known to produce oxygen: photosynthesis, chlorate
respiration and the detoxification of reactive oxygen species. Here we present evidence for a …

Molecular mechanism of anaerobic ammonium oxidation

B Kartal, WJ Maalcke, NM De Almeida, I Cirpus… - Nature, 2011 - nature.com
Two distinct microbial processes, denitrification and anaerobic ammonium oxidation
(anammox), are responsible for the release of fixed nitrogen as dinitrogen gas (N2) to the …

Exosome-mediated transmission of hepatitis C virus between human hepatoma Huh7. 5 cells

V Ramakrishnaiah, C Thumann… - Proceedings of the …, 2013 - National Acad Sciences
Recent evidence indicates there is a role for small membrane vesicles, including exosomes,
as vehicles for intercellular communication. Exosomes secreted by most cell types can …

Quantitative proteomic analysis of histone modifications

H Huang, S Lin, BA Garcia, Y Zhao - Chemical reviews, 2015 - ACS Publications
Several mechanisms have been proposed for histone marks to exert their functions,
including altering the physical properties of nucleosomes by neutralization of charge via …

Mass spectrometric sequencing of proteins from silver-stained polyacrylamide gels

A Shevchenko, M Wilm, O Vorm, M Mann - Analytical chemistry, 1996 - ACS Publications
Proteins from silver-stained gels can be digested enzymatically and the resulting peptides
analyzed and sequenced by mass spectrometry. Standard proteins yield the same peptide …

[HTML][HTML] Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

SE Ong, B Blagoev, I Kratchmarova… - Molecular & cellular …, 2002 - ASBMB
Quantitative proteomics has traditionally been performed by two-dimensional gel
electrophoresis, but recently, mass spectrometric methods based on stable isotope …

Persistence of the mitochondrial permeability transition in the absence of subunit c of human ATP synthase

J He, HC Ford, J Carroll, S Ding… - Proceedings of the …, 2017 - National Acad Sciences
The permeability transition in human mitochondria refers to the opening of a nonspecific
channel, known as the permeability transition pore (PTP), in the inner membrane. Opening …