cLD: Rare-variant linkage disequilibrium between genomic regions identifies novel genomic interactions
Linkage disequilibrium (LD) is a fundamental concept in genetics; critical for studying
genetic associations and molecular evolution. However, LD measurements are only reliable …
genetic associations and molecular evolution. However, LD measurements are only reliable …
Phantom epistasis in genomic selection: on the predictive ability of epistatic models
MF Schrauf, JWR Martini, H Simianer… - G3: Genes …, 2020 - academic.oup.com
Genomic selection uses whole-genome marker models to predict phenotypes or genetic
values for complex traits. Some of these models fit interaction terms between markers, and …
values for complex traits. Some of these models fit interaction terms between markers, and …
The impact of non-additive effects on the genetic correlation between populations
Average effects of alleles can show considerable differences between populations. The
magnitude of these differences can be measured by the additive genetic correlation …
magnitude of these differences can be measured by the additive genetic correlation …
Missing causality and heritability of autoimmune hepatitis
AJ Czaja - Digestive Diseases and Sciences, 2023 - Springer
Background Autoimmune hepatitis has an unknown cause and genetic associations that are
not disease-specific or always present. Clarification of its missing causality and heritability …
not disease-specific or always present. Clarification of its missing causality and heritability …
Complex fitness landscape shapes variation in a hyperpolymorphic species
AV Stolyarova, TV Neretina, EA Zvyagina, AV Fedotova… - Elife, 2022 - elifesciences.org
It is natural to assume that patterns of genetic variation in hyperpolymorphic species can
reveal large-scale properties of the fitness landscape that are hard to detect by studying …
reveal large-scale properties of the fitness landscape that are hard to detect by studying …
Quinoa genome assembly employing genomic variation for guided scaffolding
A Bodrug-Schepers, N Stralis-Pavese… - Theoretical and Applied …, 2021 - Springer
Key message We propose to use the natural variation between individuals of a population
for genome assembly scaffolding. In today's genome projects, multiple accessions get …
for genome assembly scaffolding. In today's genome projects, multiple accessions get …
Learning epistatic polygenic phenotypes with Boolean interactions
Detecting epistatic drivers of human phenotypes is a considerable challenge. Traditional
approaches use regression to sequentially test multiplicative interaction terms involving …
approaches use regression to sequentially test multiplicative interaction terms involving …
Gene–environment interaction in the era of precision medicine–filling the potholes rather than starting to build a new road
JM Álvarez-Castro - Frontiers in Genetics, 2020 - frontiersin.org
Gene–environment interaction is a key part of evolutionary biology, animal, and plant
breeding, and a number of health sciences, like epidemiology and precision medicine …
breeding, and a number of health sciences, like epidemiology and precision medicine …
Secure, privacy-preserving and practical collaborative Genome-Wide Association Studies
T Pascoal - 2022 - orbilu.uni.lu
[en] Understanding the interplay between genomics and human health is a crucial step for
the advancement and development of our society. Genome-Wide Association Study (GWAS) …
the advancement and development of our society. Genome-Wide Association Study (GWAS) …
A General Theory of Genetic Effects
JM Álvarez-Castro - … : Evolutionary and Quantitative Genetics Brought Up …, 2024 - Springer
The natural and orthogonal interactions (NOIA) model was originally developed not only as
one more step in the improvement of genetic models but actually as a sound basis for the …
one more step in the improvement of genetic models but actually as a sound basis for the …